Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1481 ATGGAAGGTCGCCGGAGGATAACGCTTTTCGATCAAATGACAGCTGGCAACAGTGGTGGTGGTGGTAGCAGCAGCAGCCGAGACTCACTGGCCAGCCTCATGCTCGACGACGTCGTTTTTAAGAAGGCGGAAGCCGAAGCCGAAGCCGAAGCGAGCCGCGGGCTGAGCCGCAGCCGGACTCTCCAAGACATCATTCGCGAAGAGAAGCCTAACAACGGCAGCAACAACGCGAAGGATCGGAACTCTTGGAAAGCCTTCAAGGAGAGGATTCGGCTCAAGCGCGCCGTCGGCTCGGCTTGGTCCTCCACCGCCACTTCAATTAATCACATTCACAGCAATGATGTTACGAATTTACCTGAAACTCGCAACGACTCGGACGAGTCGACGACTCAGCAGAACGACGTCGTTGTGGTTGTGGAAGAAACCAACGATTCGGATCCGATCATGCGGTTCGGTTCTCCGGCGGACACCACGGCGGCCGGCGGAGACTCCTCCGATGGAGAGAACAACCACGAGGCGGTGGTCGGCGTGTCGCTGATGGATCTCTTGGAGGAAGCGGAGCAGGAAATGGATTTGTACAGAGTGAGCGACGACGCCGACGAAGAAGTGGCAACAGAATATGAGAAGCGAGGGGAAGAAGAAAAAAGGGGTGTGGAAGAAGAAATAGGGGGTGTGGTGGAGTATAACTGCTGCGTGTGCATGGTGCGGCATAAAGGCGCGGCGTTTATCCCGTGCGGGCACACGTTCTGCAGAGCGTGTTCGAGGGAGATTTGGGTGAGCAGAGGGAACTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA 837 0.5508 MEGRRRITLFDQMTAGNSGGGGSSSSRDSLASLMLDDVVFKKAEAEAEAEASRGLSRSRTLQDIIREEKPNNGSNNAKDRNSWKAFKERIRLKRAVGSAWSSTATSINHIHSNDVTNLPETRNDSDESTTQQNDVVVVVEETNDSDPIMRFGSPADTTAAGGDSSDGENNHEAVVGVSLMDLLEEAEQEMDLYRVSDDADEEVATEYEKRGEEEKRGVEEEIGGVVEYNCCVCMVRHKGAAFIPCGHTFCRACSREIWVSRGNCPLCNNLILEILDIF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1481 278 PANTHER OS01G0917900 PROTEIN 114 278 - -
Aed2g1481 278 SMART ring_2 230 267 IPR001841 -
Aed2g1481 278 PANTHER OS01G0917900 PROTEIN 24 135 - -
Aed2g1481 278 MobiDBLite consensus disorder prediction 1 28 - -
Aed2g1481 278 Pfam Zinc finger, C3HC4 type (RING finger) 228 271 - -
Aed2g1481 278 MobiDBLite consensus disorder prediction 146 169 - -
Aed2g1481 278 ProSiteProfiles Zinc finger RING-type profile. 230 268 IPR001841 -
Aed2g1481 278 CDD RING-HC 230 267 - -
Aed2g1481 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 275 IPR013083 -
Aed2g1481 278 SUPERFAMILY RING/U-box 229 274 - -
Aed2g1481 278 MobiDBLite consensus disorder prediction 46 82 - -
Aed2g1481 278 MobiDBLite consensus disorder prediction 11 28 - -
Aed2g1481 278 PANTHER OS01G0917900 PROTEIN 24 135 - -
Aed2g1481 278 PANTHER OS01G0917900 PROTEIN 114 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1481 Aed-Chr2 17437007 17437843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1481 4 278 C3H Transcription Factor Family AT3G25030 36.429 6.16e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1481 - - gmx:100819018 363.229