Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1402 ATGGTAGATCCTGTCAACCTTTGCATTGACACTACATGTGAGAGGTCAGCCATTAAAGCTTGGTTTGATGATGGAAACAGGATTGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGATCAAATGCTCTCATAAGAGAGAATTCCATTAACAACGATTGGATTTCTATAGGAGAGCTTACTAATATTATTATCTCTATCCTTGGAGGATCTGATTCTAGAGATGTGAAGATGAAGATTTTGATTAATTTGAAGGATGCGATAGAGGGGCATGCAAGAAACAAGGTAAGCAATAATTATACGTGTGATGCACCAAGGATCAGAGTCTTCAGGAATGTCGCAAAAGCCATAGTTAATTTGGAGTTGAAAGATTTGAACTTGAAACACCTTGGCGAGCTAGGAGTTATACTCCCTTTGCTAGAAATGCTATCCAGCAACATTGAATCTAAAGAACTGTCATTGTCAGCACGGCTTAAACTAGCAAGATTACATTCCAACAAGGGGATTATTGCAAAATGTGGAGGTGTGCCTCTTGTTGTAGATTTAATGTTCTCTTGCAAGATGCGATCATTCATTACCATTAAATATTTTGAAATCCTTGAGATTGCTTTAGATGAGGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATAACATCATCACCAATTTGCTAGCTCTGATGCAGAGTCTGAGCTCAACTCACTACCGAAAGTCTGCATTACATGCTCTTCTTCGCATTTGCAACTTTGAGACTAGTTTAGTTAAGAAGGCGATTCTAGCAACCAATGGCGTAAAAGGAAAAAGCGACATAAAAATAGTTGTCACATACATCATTGGTGATGCCACATCATCTAGCGACACACCCATTGGTGATGCCACTTAA 906 0.3863 MVDPVNLCIDTTCERSAIKAWFDDGNRIDPETKEVLEDTTLRSNALIRENSINNDWISIGELTNIIISILGGSDSRDVKMKILINLKDAIEGHARNKVSNNYTCDAPRIRVFRNVAKAIVNLELKDLNLKHLGELGVILPLLEMLSSNIESKELSLSARLKLARLHSNKGIIAKCGGVPLVVDLMFSCKMRSFITIKYFEILEIALDEDGIDFFVDGEGKQLELDNIITNLLALMQSLSSTHYRKSALHALLRICNFETSLVKKAILATNGVKGKSDIKIVVTYIIGDATSSSDTPIGDAT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1402 301 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Aed2g1402 301 SUPERFAMILY RING/U-box 1 49 - -
Aed2g1402 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 58 IPR013083 -
Aed2g1402 301 SUPERFAMILY ARM repeat 103 263 IPR016024 -
Aed2g1402 301 Pfam U-box domain 1 49 IPR003613 GO:0004842|GO:0016567
Aed2g1402 301 Gene3D - 107 274 IPR011989 -
Aed2g1402 301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 45 98 - -
Aed2g1402 301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 115 272 - -
Aed2g1402 301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 48 - -
Aed2g1402 301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 45 98 - -
Aed2g1402 301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 115 272 - -
Aed2g1402 301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1402 Aed-Chr2 14992796 15012463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1402 1 191 U-box Gene Family AT5G42340 25.455 3.02e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1402 - - gsj:114377374 210.69