Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1396 ATGAAAGAGAGAATAAGCTTTTCTGCGAAGAGAGTGTGGCGTGACTTGGACTTCATTCACCAGTCAATTCCTCCACTGCAGTGCCGTCATCGAAGAAAGGTTCATGTCTACGGTATCATTGTCATGGTTTCAGAGCATCGAGCCTGCTCCCAAGGATCCAAACCTTTCCTCGAGGCTGAACGAACCTTTGTTGGCGCCTTTGCCCCGACGGACCACCGCGCCCGAGCCACGAACCACCGCGGGCTAGCCACAGACGCTGCGCGAGAACGAACCTTGCTGGCGCCTTTGCACGGAGGGATCTTCATTCTTCCGCCTTCTCTGTTCGCGGACGACCACAGAGCTGCTTCGACCTTTGCTGCTGTCTCGTGTGTGCGTGTGCCCTCCCTGCTGCTTCGACCTTCGCTGCTGATTCTAGACTTCGACGGCGAGTGCGACACCGGCAGCGTCTTCGACGCCGGTAGCTGTAGCTTCGTTCTAGTTATGGAAGATTCTGATCAACCAGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGGTATGTCTGCTTATTTTATATATAATTTGTTATGTGTAGTTTTTTCAGAAAACCGGTTAATAAAAAGAATATCAGGAAACGAACTATTGATAATGAAGATAATGAGGAGGGACACAAACAAAGAAACTTCTCTGTTGCATATTCAGAAGAAGACCTTAAAGTCTGACAATAAGTTGTACTTTTCCACTGGCTCTTCAAAAAGCTCTGCATCTGCTGAACCAAGTGAGGAATTGGGAAAATCCGTCTTTCAGTTCGAGTCTTCTAAAGAAATTCAAGTTCAACATGATAATAAAGCAACAGCAACTCTAGAGACTGAGACTGACTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTAATGCAAGCAGAGGAGAGTCTGAAAGGGAAAAGTGCAAGCTCTGAGAATGAAAAATTATATAAGGGAATTAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGTCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCGGCATGGTTTGATTATCAGCTTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAAAAGAGGATGCGGATGAGGAGGAGGAAACCAAGTGCAAGCACTACTTCTGCAAGCATTGTGCATTGAAGCATCATGCAAAGAACAAGAAGTGTTTTGTCTGCAACCAGCCAACGCTTGGCATTTTCAATGTTGCTCATGAGATACGCAGGAAGATGGCTGAGGATAAAGATAAATCATAA 1428 0.4545 MKERISFSAKRVWRDLDFIHQSIPPLQCRHRRKVHVYGIIVMVSEHRACSQGSKPFLEAERTFVGAFAPTDHRARATNHRGLATDAARERTLLAPLHGGIFILPPSLFADDHRAASTFAAVSCVRVPSLLLRPSLLILDFDGECDTGSVFDAGSCSFVLVMEDSDQPAKSAENQQTEQGMSAYFIYNLLCVVFSENRLIKRISGNELLIMKIMRRDTNKETSLLHIQKKTLKSDNKLYFSTGSSKSSASAEPSEELGKSVFQFESSKEIQVQHDNKATATLETETDFSKDARAIRERALMQAEESLKGKSASSENEKLYKGINSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSAWFDYQLDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARKMRLAAKEDADEEEETKCKHYFCKHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKDKS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1396 475 CDD RING-HC_RNF113A_B 426 451 - -
Aed2g1396 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 365 389 IPR000571 GO:0046872
Aed2g1396 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 470 IPR013083 -
Aed2g1396 475 ProSitePatterns Zinc finger RING-type signature. 428 437 IPR017907 -
Aed2g1396 475 Coils Coil 406 426 - -
Aed2g1396 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 426 472 - -
Aed2g1396 475 SMART c3hfinal6 363 390 IPR000571 GO:0046872
Aed2g1396 475 PANTHER ZINC FINGER PROTEIN 183 215 423 IPR039971 -
Aed2g1396 475 Gene3D - 363 395 - -
Aed2g1396 475 PANTHER ZINC FINGER PROTEIN 183 426 472 IPR039971 -
Aed2g1396 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 215 423 - -
Aed2g1396 475 ProSiteProfiles Zinc finger C3H1-type profile. 363 391 IPR000571 GO:0046872
Aed2g1396 475 SUPERFAMILY RING/U-box 424 455 - -
Aed2g1396 475 SUPERFAMILY CCCH zinc finger 361 394 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1396 Aed-Chr2 14765525 14769272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1396 161 475 C2H2 Transcription Factor Family AT1G01350 55.848 1.99e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed2g1396 zf-CCCH 7.6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1396 K13127 - gmx:100787434 484.182