Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1380 ATGAAGATTCAGTGCAACGTGTGCGAGGCCGCGGAGGCGAAGGTTCTGTGCTCTGCGGACGAGGCGGCGCTGTGCTGGGAATGCGACGAGAAGGTTCACGCCGCGAACAAGCTCGTCACCAAGCACCAGAGAGTTCCTCTTTCTCTCTCTCCCTCTCACGTCCCCAAGTGTGACATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGAGCTTTGCTATGTAGGAATTGTGATGTATCTATACACACATCAAATGCTCGTGTCTCTGGCCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACCGAGCGCGGTGCTTCCTCGTCTTCTTTGAAGTCACAGTCTGGCGAGAATATGTCTGATGTTAAATCTTCATCCATCTCCAAAAATGTTTCCTCACTGCCCCAACCATCAAATGTTGTCAACGAAGTGTTACCCCTCCAAAATATGCAAGGAGTTGAGGAGTTTCCACCAAACAATTTCTCGGGTTATACTTCTGGAAACATCTCGCAATGGCCCATTGAAGAATTTCTCGGATTAAATGAATTCAGTCAGTATTATAATTACATGGATGGATCATCTAAGGCTGACAGTGGTAAACTTGGGGATTCTGATTCTTCTGTATTGAGGTCTAGTGAAGAGGAAATGGATGATGACAACTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCTTCGGGTCTATATTGGCCGAAAGTCCCCCAATATACATCTGACAATGCCATGTCTGTTCCTGACATATGCTTTTCTCGTGTGCAACAGCCCCGCCATGCTCAGCATAACTCCACTCTTTCGAAACTTATAAACTACTACATAGATGCATGTATTTTGTCATCATATCCTGTTCAATATATAAGCTGGTTCTTGTAA 939 0.4569 MKIQCNVCEAAEAKVLCSADEAALCWECDEKVHAANKLVTKHQRVPLSLSPSHVPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTSNARVSGHQRFLLTGVRVGLEATERGASSSSLKSQSGENMSDVKSSSISKNVSSLPQPSNVVNEVLPLQNMQGVEEFPPNNFSGYTSGNISQWPIEEFLGLNEFSQYYNYMDGSSKADSGKLGDSDSSVLRSSEEEMDDDNFLGRVPDSSWTVPQIPSPPTASGLYWPKVPQYTSDNAMSVPDICFSRVQQPRHAQHNSTLSKLINYYIDACILSSYPVQYISWFL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1380 312 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed2g1380 312 SMART bboxneu5 52 99 IPR000315 GO:0008270
Aed2g1380 312 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed2g1380 312 Gene3D Classic Zinc Finger 1 93 - -
Aed2g1380 312 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 278 - -
Aed2g1380 312 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Aed2g1380 312 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Aed2g1380 312 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Aed2g1380 312 MobiDBLite consensus disorder prediction 214 229 - -
Aed2g1380 312 MobiDBLite consensus disorder prediction 201 230 - -
Aed2g1380 312 MobiDBLite consensus disorder prediction 113 141 - -
Aed2g1380 312 CDD Bbox1_BBX-like 5 47 - -
Aed2g1380 312 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 278 - -
Aed2g1380 312 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1380 Aed-Chr2 14538087 14542415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1380 1 270 C2C2-CO-like Transcription Factor Family AT1G78600 48.867 8.66e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed2g1380 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1380 - - gmx:100808889 520.776