Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1322 ATGTTGAGCCGCGCCGCGAATGGTGAAGTGGTTGGTTCGGGTGAGAGTGAAGATGAGCTGTATGAGCAGCTGTGGAAGGCTTGCGCAGGACCACTGGTGGATGTTCCTCGTGTTCACCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAAGCTTCTACCAACCAGGAACTGAATCAGAGGATTCCTTTGCTGAAGCTTCCCACGAAGATCCTTTGCAGCGTCGTGAATGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATAACTTTGGTGCCGGAATCTAATCAAGATGAGCCTACGAACGCTGATCCGTGCACCACTGAACCTCCGAGAGCACCGGTCCACTCATTCAGCAAGGTCTTGACTGCTTCAGATACCAGCACCCATGGCGGCTTCTCTGTTCTCCGGAAACATGCCACGGAGTGCCTTCCCACGTTGGACATGTCCCAACCAACGCCAACTCAGGAATTGGTTGCGAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTCAGAGTGTATTATAAGCCCAGGACGAGCCAGTTCATCGTAGGCGTGAACAAGTATTTGGAGGCTATGAATAGCAAGTTTAGTGTTGGCATGAGGTTCAGGATGAGATTTGAAGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTTCAATGGGATGAATCTGCAGCTGTTCATAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTTGCTTCGGCTTCTACACCCTCGGTTCAACCTACTATGGTAAAGACTAAAAGGCCCCGGCCACCCAGCGAAACTCCAGATGTTGACACAACATCTGCTGCTTCTGTTTTCTGGGATGCTGGTCTGCCACCACAGGCTGATATGACACAAAAAAACGTTTTGGCCGAAAGCAAACGGAATGACAACAATGGCAGTACATGGCATCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAGTGGCAACGCTACTACTATGTTGAGGAATCAGACAGAGGGAAGTTGGCTATCTTCTCCGCATTCTAGTTGTCCATCACATTTGTTTCAGGACACCACAGATGAAAGCAAGAGTGTCTCAGCTTGGCCTGTTTCAAAGCCTCACTCATCATCCAGATTGAACAACGATCACGCGCTTGACCAAGTCGACAAGGAGAGCAGCAAAGTTGAGAGTGCTACGAGTTACCGGTTGTTCGGAATCGATCTTGTTGATCATTCTAGGAACTCTCCTTTTGTAGAGAAGGCATCTGCACAAGCAGTAAATGCTCCCAAAGTTGCTAATGAAGGCTGTACCAGCACTGTGTCCCTAACTGACGCTGGCCATAAGTCGGATTTACCAAAGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAGCAAGTGTCACCAATGGAGACTCAGAGCAAGCAAATCTGTAGAAGTCGAACCAAGGTTTGTTTATTTAGATAA 1506 0.4748 MLSRAANGEVVGSGESEDELYEQLWKACAGPLVDVPRVHQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCSVVNVHLLAEQETDEVYAQITLVPESNQDEPTNADPCTTEPPRAPVHSFSKVLTASDTSTHGGFSVLRKHATECLPTLDMSQPTPTQELVAKDLHGYEWRFKHIFRVYYKPRTSQFIVGVNKYLEAMNSKFSVGMRFRMRFEGDDSAETDKRFSGTIVGVQWDESAAVHRPDRVSPWEIEPFVASASTPSVQPTMVKTKRPRPPSETPDVDTTSAASVFWDAGLPPQADMTQKNVLAESKRNDNNGSTWHHHMQTDMNSKSNSNSGNATTMLRNQTEGSWLSSPHSSCPSHLFQDTTDESKSVSAWPVSKPHSSSRLNNDHALDQVDKESSKVESATSYRLFGIDLVDHSRNSPFVEKASAQAVNAPKVANEGCTSTVSLTDAGHKSDLPKASSKERKQEQQQVSPMETQSKQICRSRTKVCLFR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1322 501 CDD B3_DNA 123 182 IPR003340 GO:0003677
Aed2g1322 501 Gene3D - 122 207 IPR015300 -
Aed2g1322 501 SUPERFAMILY DNA-binding pseudobarrel domain 114 203 IPR015300 -
Aed2g1322 501 MobiDBLite consensus disorder prediction 453 488 - -
Aed2g1322 501 MobiDBLite consensus disorder prediction 464 478 - -
Aed2g1322 501 Gene3D - 208 235 - -
Aed2g1322 501 Gene3D - 236 264 - -
Aed2g1322 501 MobiDBLite consensus disorder prediction 262 288 - -
Aed2g1322 501 MobiDBLite consensus disorder prediction 316 406 - -
Aed2g1322 501 Pfam Auxin response factor 178 238 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed2g1322 501 PANTHER AUXIN RESPONSE FACTOR 181 498 - -
Aed2g1322 501 PANTHER AUXIN RESPONSE FACTOR 14 182 - -
Aed2g1322 501 MobiDBLite consensus disorder prediction 316 396 - -
Aed2g1322 501 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 181 498 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed2g1322 501 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 182 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1322 Aed-Chr2 12818960 12824395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1322 180 282 B3 DNA Binding Superfamily AT2G46530 50.833 5.40e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1322 K14486 - gmx:100779003 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1876 9 22315033 22321706 Aed2g1322 2 12818960 12824395 PCT