Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1288 ATGGAAGTAGAGAAGGAAAATACCACATCGACTGCAGAACCCTCTGTACCTGCCTCTGATGGTCAAGATCCTGTTTCTTCTGTTAATGCATCTCTACCCCATCCTATACAAGCTGCTAATCCATCAGTTATTGCACCTTCTGTTGTACCTACTTTAGCTGCAATTCCTCCCCCTCGCCCGTTGGCACCGCTTCCAGTTCGTCCACCGGTCATTAGGCCACCTGTGCCACAAAATGGTGAGGCTGGATCAAGTGGCTCTGATTCAGACAATGATGACTCAAATTCAAGAATTAACCAGGGGGGTGGGGAGTATGAGATATCCGAAGAGAGTAGACTGGTGAGAGAACGGCAGGAAAAGGCAATACAGGAACTCATGATGAAGAGGCGTGCCGCTGCTCTTGCTGTTCCTACAAATGATATGGCTGTGCGAGCTCGGCTTCGACATCTTGGTGAACCGATAACATTGTTTGGTGAGAGGGAGATGGAGAGACGGGATAGGTTGCGAATGATTATGGCAAAGTTGGATGCAGAAGGCCAGCTGGAGAAGCTGATGAAAGCTCATGAGGAAGAAGAGGCCGTGGCTTCTGCTCCGAAAGACGAGGCTGAGGACGAACTGCAGTATTCTTATCCTTTTTACACTGAAGGGTCAAAGGCTCTTCTGGATGCCAGAATTTATATTGCTAAATATTCTTTGGCAAGGGCAGCATTACGGATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGAGGCAGAGATGGATTGGGCATTGAGACAGGCTGGGAGTTTGAATCTTGAATTCAGTGAAATTGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCTACTTGTTCTCTGACTGGAGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAGCATTCCACCTTTAAGGGGCACACAGAGCGTGCTACTGACGTTGCTTATTCTCCTGTTCATGATCATCTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATGATCAAGGATCTCTTTTGAAGACATTCGAGGGTCATCTAGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGACGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGATTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGATCTTCGAACTGGAAGAAGTATTCTTGCACTAGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCTAATGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTAAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCTAATTTAATATCAGAAGTTAAATTTGAGCCACAAGCAGATGGCGGGTATATTGTTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAATAAGACTGATGAACAAGCTATGGATGTTGACTAA 1584 0.4609 MEVEKENTTSTAEPSVPASDGQDPVSSVNASLPHPIQAANPSVIAPSVVPTLAAIPPPRPLAPLPVRPPVIRPPVPQNGEAGSSGSDSDNDDSNSRINQGGGEYEISEESRLVRERQEKAIQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAVASAPKDEAEDELQYSYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQRRRDDPDEDMEAEMDWALRQAGSLNLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSMPKIKKHSTFKGHTERATDVAYSPVHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLDFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISEVKFEPQADGGYIVTVSHDRTIKLWSSNKTDEQAMDVD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1288 527 PANTHER WD40 REPEAT PROTEIN 67 516 - -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 396 IPR001680 GO:0005515
Aed2g1288 527 SUPERFAMILY WD40 repeat-like 269 518 IPR036322 GO:0005515
Aed2g1288 527 SUPERFAMILY PRP4-like 120 175 IPR036285 -
Aed2g1288 527 MobiDBLite consensus disorder prediction 1 33 - -
Aed2g1288 527 Pfam pre-mRNA processing factor 4 (PRP4) like 142 168 IPR014906 -
Aed2g1288 527 Pfam WD domain, G-beta repeat 398 429 IPR001680 GO:0005515
Aed2g1288 527 Pfam WD domain, G-beta repeat 479 515 IPR001680 GO:0005515
Aed2g1288 527 Pfam WD domain, G-beta repeat 437 471 IPR001680 GO:0005515
Aed2g1288 527 Pfam WD domain, G-beta repeat 312 346 IPR001680 GO:0005515
Aed2g1288 527 Pfam WD domain, G-beta repeat 349 387 IPR001680 GO:0005515
Aed2g1288 527 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Aed2g1288 527 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Aed2g1288 527 PRINTS G protein beta WD-40 repeat signature 458 472 IPR020472 -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 439 473 - -
Aed2g1288 527 Gene3D - 113 183 IPR036285 -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 391 - -
Aed2g1288 527 MobiDBLite consensus disorder prediction 52 111 - -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 481 524 IPR001680 GO:0005515
Aed2g1288 527 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Aed2g1288 527 Gene3D - 389 524 IPR015943 GO:0005515
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 480 IPR001680 GO:0005515
Aed2g1288 527 CDD WD40 278 524 - -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 481 515 - -
Aed2g1288 527 ProSitePatterns Trp-Asp (WD) repeats signature. 374 388 IPR019775 -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Aed2g1288 527 SMART pr04_2 137 190 IPR014906 -
Aed2g1288 527 Gene3D - 258 388 IPR015943 GO:0005515
Aed2g1288 527 PANTHER BNAC04G01920D PROTEIN 67 516 - -
Aed2g1288 527 ProSitePatterns Trp-Asp (WD) repeats signature. 458 472 IPR019775 -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 346 IPR001680 GO:0005515
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Aed2g1288 527 SMART WD40_4 265 304 IPR001680 GO:0005515
Aed2g1288 527 SMART WD40_4 307 346 IPR001680 GO:0005515
Aed2g1288 527 SMART WD40_4 348 387 IPR001680 GO:0005515
Aed2g1288 527 SMART WD40_4 432 471 IPR001680 GO:0005515
Aed2g1288 527 SMART WD40_4 474 515 IPR001680 GO:0005515
Aed2g1288 527 SMART WD40_4 390 429 IPR001680 GO:0005515
Aed2g1288 527 MobiDBLite consensus disorder prediction 52 75 - -
Aed2g1288 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 434 - -
Aed2g1288 527 Coils Coil 173 193 - -
Aed2g1288 527 MobiDBLite consensus disorder prediction 8 33 - -
Aed2g1288 527 MobiDBLite consensus disorder prediction 79 101 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1288 291 516 U-box Gene Family AT2G33340 31.760 2.63e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1288 K12662 - gmx:100788948 842.802