Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1274 ATGGAACAGGGTCAATGTTGGACAAAGAGGAAGTACTCTTTGAGCTCTAGTCTTCTTGGTTCTTCACCACCACCACCAACAGCAACAACAACAACCCCTTCCTATGGTGGTGACTCATCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGTAGCTAACTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGCAGCTTCTGCAGAAGAGAGTTCAGGTCAGCACAGGCTTTAGGTGGCCACATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAGCAACAACAACAACAACCCTCTAGCCCCCACAACGAAAAAATCCTATGCCATCATGGCCTTGAAACTCATCATCAGCTCCACAATAAGCCAGTTCTTCAAAGTAGTACTCCTTTTGCTTCTTTGGGTGGTTACCTTTACTCTTCTTTTGCTCCTAACCCTAATTCTGATCCTGATTTTGTTGCTTCTTCACCTTCTTCCTCATCACCCTCACCTTCTTCCAAGGCCTTATTGCCTGATCCATCAGTTACTATTGATAGCAGCTTCAGAGAGGAAACCATGATGATTCCACTTTATGAATCATGGCCAAATTTAGCTGAAGAAGATCATAGATTATATTCATGTAAGTTCCACCCTCAAGCTGATACTAAGAAATTACCCTCCAAGGGAATAATGGATTCTAGATGTTGTAGGGATAATAAAAATGATGATATTGATCATGGGGTTATGAGGTTGAATTCATCAGTTGTGTATAGAACTCACCCATCTTTGAAGTTTGATGATAGTACTACTAAAGAGCCAGATCATATCATCAGCTGCAAGAAGAGGAAAAAAGATGCTTCCTCAACTCTAGTTTCACCAAAGTCAAGTTCAGTTGATGATACACATGATCATCAGGTGAAGCCAACAAAGATGTTCGTTGAGTTTAGCCCTAGCTCAATGGAAGAACTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 993 0.4159 MEQGQCWTKRKYSLSSSLLGSSPPPPTATTTTPSYGGDSSWEEQAFAEDAVANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQQQQQPSSPHNEKILCHHGLETHHQLHNKPVLQSSTPFASLGGYLYSSFAPNPNSDPDFVASSPSSSSPSPSSKALLPDPSVTIDSSFREETMMIPLYESWPNLAEEDHRLYSCKFHPQADTKKLPSKGIMDSRCCRDNKNDDIDHGVMRLNSSVVYRTHPSLKFDDSTTKEPDHIISCKKRKKDASSTLVSPKSSSVDDTHDHQVKPTKMFVEFSPSSMEELDLELRLGNRSKV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1274 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Aed2g1274 330 MobiDBLite consensus disorder prediction 14 40 - -
Aed2g1274 330 SMART c2h2final6 65 87 IPR013087 -
Aed2g1274 330 Pfam C2H2-type zinc finger 65 89 - -
Aed2g1274 330 PANTHER OS07G0101800 PROTEIN 1 330 - -
Aed2g1274 330 SUPERFAMILY beta-beta-alpha zinc fingers 62 91 IPR036236 -
Aed2g1274 330 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 330 - -
Aed2g1274 330 MobiDBLite consensus disorder prediction 271 300 - -
Aed2g1274 330 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Aed2g1274 330 MobiDBLite consensus disorder prediction 81 107 - -
Aed2g1274 330 MobiDBLite consensus disorder prediction 152 176 - -
Aed2g1274 330 MobiDBLite consensus disorder prediction 14 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1274 Aed-Chr2 11917782 11918774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1274 30 103 C2H2 Transcription Factor Family AT5G06070 66.234 3.25e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g1274 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1274 - - gmx:100804148 363.614