Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1253 ATGTCAAGTCCTCAGATGTGTCATGTGGATTTAGAGCAAGGCAGTAGTCGTCACCATCACCACCACCACCACCGTTCTGTGAGTGGTGGCAGTGAAATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCCTGCTATTCCCATTTCTATTCAACAAATGGTGACCCTTATGATGATTACACCTTTGGTTGTGTTTCTGATGATACTGCTGAGGTTTCTTCTAGAAAGGGTTCTCCTGTTTCTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTGTTGGTCCTGAAATTAAGGTGCATTTGGCAAAAGTGGAGATGGATTGCAGAATTTGTCACCTTGGCTTGGATTGTGATGATAGTCTTGAGTGTGGAGTTCCCATTGAATTGGGGTGTGCTTGTAAGAATGATTTGGCTGCTGCTCACAAGAACTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGTACATGCGAAATATGTCAATGTGTTGCAAGGAACGTTTGCCCCGCAAACGAAGAGACAACGCAGACATCATTGAGTGACAGCAACAATGGCAATGGAGCATCATCCACAATCTCAACAGCAGCATCTCCATCAGAGCCTAGAAGATCATTGCAAGGCCATCGCTTCCTCAATCTTCTCCTTGCTTGTATAGTTTTTGCATTTGTCATATCCTGGCTTTTTCACTTCAACATGCAATCATCATCATCATAG 717 0.4407 MSSPQMCHVDLEQGSSRHHHHHHHRSVSGGSEMSMCFSDAENGSCYSHFYSTNGDPYDDYTFGCVSDDTAEVSSRKGSPVSDCSVEVEIESGVVGPEIKVHLAKVEMDCRICHLGLDCDDSLECGVPIELGCACKNDLAAAHKNCAEAWFKIKGNSTCEICQCVARNVCPANEETTQTSLSDSNNGNGASSTISTAASPSEPRRSLQGHRFLNLLLACIVFAFVISWLFHFNMQSSSS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1253 238 SUPERFAMILY RING/U-box 106 165 - -
Aed2g1253 238 MobiDBLite consensus disorder prediction 177 202 - -
Aed2g1253 238 MobiDBLite consensus disorder prediction 1 30 - -
Aed2g1253 238 CDD RING_CH-C4HC3_MARCH 109 162 - -
Aed2g1253 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 170 IPR013083 -
Aed2g1253 238 ProSiteProfiles Zinc finger RING-CH-type profile. 101 168 IPR011016 GO:0008270
Aed2g1253 238 PANTHER ZINC FINGER, RING-CH-TYPE 5 234 - -
Aed2g1253 238 SMART ringv_2 108 162 IPR011016 GO:0008270
Aed2g1253 238 Pfam RING-variant domain 109 161 IPR011016 GO:0008270
Aed2g1253 238 PANTHER OS01G0850200 PROTEIN 5 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1253 Aed-Chr2 11179472 11182652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1253 53 236 C3H Transcription Factor Family AT5G05830 50.802 6.58e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1253 - - gmx:100812277 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2117 3 25034009 25037139 Aed2g1253 2 11179472 11182652 ECH
Aed9g1939 9 22782526 22785919 Aed2g1253 2 11179472 11182652 ECH
Aed2g1253 2 11179472 11182652 Aed3g2117 3 25034009 25037139 ECH
Aed2g1253 2 11179472 11182652 Aed2g1253 2 11179472 11182652 ECH