Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1252 ATGGAACCGGAAGAAACCGCCGCCACCGCCGCCGCCGACGGAAGCGGCGACGAGGGGCTGCTCGGATTAGACGGCGGAGGCAGCAGCGGAGGAAGGGACAGAGTCAAGGGTCCATGGTCGCCGGAGGAGGACGCCATTCTGAGCCGTCTCGTGAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCGCGGGGGATTAGCGGAAGATCCGGCAAGTCGTGCCGCCTCCGGTGGTGCAACCAGCTCGACCCCGCCGTTAAGCGCAAACCCTTCACCGATGAGGAGGACCGGATCATAGTTGCTGCTCATGAAATCTATGGGAACAAATGGGCAGCCATTGCCAGGCGTCTACAGGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGTGGAGTTGGACTTGATACGATTAAATTAGAATCTGGCAACTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCGGAAGACACTCTATCATGTGAGGATGTTTCTTTGAAGTCCTCAGAAGGGAGAGATGCCAGTTCTATGGAGATCATGGATGATAAATCTGACAACAAAGCACAAACTGAGGGTCAATTACACCATGAAGCCAAGGACCCACCTACCCTTTTCCGGCCAGTACCACGCGTGAGTGCTTTTAATGTGTATCACTCATTTGATGGTATGCAGCCTTCAACATCAATTCAAAGACCTGTTCCGACGCAAGCACCCGCTTTACAATCATCAAAACCGGATATGGAATTTTGTAGAATGCTTGAAGGAATTTGTGGTGACCCGTCAGTGCCTCACCAGTGTGGCCATGGTTGCTGTGCTGCTCCAAATGGTAGAAAGTCCAAAAGCTCTCTGTTGGGACCAGAATTCATTGAATTTTCGGAACCTCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGTAGTGCCAAAATGATGGGCAACCCCTCTGGCAACAGGGTTGTATCTAATGGATCTCAAGTACATATTGGCCATTAA 1065 0.5033 MEPEETAATAAADGSGDEGLLGLDGGGSSGGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHEIYGNKWAAIARRLQGRTDNAIKNHWNSTLRRRGVGLDTIKLESGNFMEDVSLEKAKASSEDTLSCEDVSLKSSEGRDASSMEIMDDKSDNKAQTEGQLHHEAKDPPTLFRPVPRVSAFNVYHSFDGMQPSTSIQRPVPTQAPALQSSKPDMEFCRMLEGICGDPSVPHQCGHGCCAAPNGRKSKSSLLGPEFIEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSAKMMGNPSGNRVVSNGSQVHIGH 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1252 354 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Aed2g1252 354 MobiDBLite consensus disorder prediction 333 354 - -
Aed2g1252 354 MobiDBLite consensus disorder prediction 174 211 - -
Aed2g1252 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Aed2g1252 354 MobiDBLite consensus disorder prediction 169 213 - -
Aed2g1252 354 SMART sant 35 84 IPR001005 -
Aed2g1252 354 SMART sant 87 135 IPR001005 -
Aed2g1252 354 Pfam Myb-like DNA-binding domain 39 96 - -
Aed2g1252 354 Gene3D - 90 136 - -
Aed2g1252 354 CDD SANT 38 80 IPR001005 -
Aed2g1252 354 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Aed2g1252 354 Gene3D - 35 87 - -
Aed2g1252 354 CDD SANT 90 133 IPR001005 -
Aed2g1252 354 PANTHER - 1 331 - -
Aed2g1252 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Aed2g1252 354 PANTHER MYB PROTEIN-RELATED 1 331 - -
Aed2g1252 354 MobiDBLite consensus disorder prediction 1 39 - -
Aed2g1252 354 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1252 Aed-Chr2 11148569 11153612 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1252 22 354 MYB Transcription Factor Family AT3G09230 51.453 2.12e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed2g1252 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1252 K09422 - gmx:100811740 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2118 3 25038715 25041606 Aed2g1252 2 11148569 11153612 ECH
Aed2g1252 2 11148569 11153612 Aed2g1252 2 11148569 11153612 ECH