Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1245 ATGGCAGAGGAGGATTCAAAGCCTTTGAACTACATCCCCGAGGTCATACTCAAGAAGAGGAAACACACCGAAGCATGGGCGTTGCGGAAAAAAGATCAATTCCAGCAGAAAAAATACCAATCCATCAAGAAGCCCGAAGATTTCATCCACGAGTATCGCAACAGGGAGGTGGACCTTCTAAGAATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTTTGATAATCATTCGGATACAAGGGAAAAAGGACATGCATCCAAGGACGAAGAAGGTATTGTACAGCTTGGGGTTGAGGAAAGTGTTCAGTGCTGTGTTTGTGAAGCCGAGTGAGGGAGTAATGGCCAAGCTGCAGAGGGTGGAGCCATATGTAACCTATGGATATCCAAATCTTAAAACCATAAAGGATCTAATTTACAAAAAAGGACAAGCAAGGTTGGAAAAGCGAAAAGCTCCCTTGATGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTTGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTCTAATGCTGGTCCACACTTTAAGGAAGTTGTCAGTTTTATGTGGCCTTTTGAGCTCAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCCTATTCAAGGAAGGCGGAGACACAGGGAACCGTGATGATCTCATGAATGAACTAATCAATAAAATGAATTAA 711 0.4248 MAEEDSKPLNYIPEVILKKRKHTEAWALRKKDQFQQKKYQSIKKPEDFIHEYRNREVDLLRMKRRVKRKVPEANSNTLIIIRIQGKKDMHPRTKKVLYSLGLRKVFSAVFVKPSEGVMAKLQRVEPYVTYGYPNLKTIKDLIYKKGQARLEKRKAPLMDNNIIEQELGKFGIVCIEDMVHQISNAGPHFKEVVSFMWPFELNKPAEGLKGSKTLFKEGGDTGNRDDLMNELINKMN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1245 236 TIGRFAM uL30_euk: 60S ribosomal protein uL30 17 236 IPR005998 GO:0000463|GO:0003735|GO:0022625
Aed2g1245 236 Gene3D - 77 236 IPR036919 -
Aed2g1245 236 CDD Ribosomal_L7_archeal_euk 78 236 IPR035808 -
Aed2g1245 236 SUPERFAMILY Ribosomal protein L30p/L7e 79 236 IPR036919 -
Aed2g1245 236 Pfam Ribosomal protein L30p/L7e 78 128 IPR016082 -
Aed2g1245 236 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 236 - -
Aed2g1245 236 PANTHER 60S RIBOSOMAL PROTEIN L7 3 236 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1245 Aed-Chr2 10994251 10997147 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1245 1 236 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 53.036 4.58e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1245 K02937 - gmx:100306107 436.032