Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1160 GTGGAAGAGAACATCTGCAAATTTGCTAAGAAAGGTCTTGCTCCTTCTCAGTTAAGTGTTATTCTTCGTGACTCATGGAATTGCTCAAGTGAGAAGGTCATTAGAAGCAAGATTCTTCATATATTGAAGGCTCATGGGCTTGCACCTGAAATCCCTGAAGATCCGTATCACTTGATCAAGAAGGTTGTCTCTATTAGGAAGCACTTGGAAAGGAACAGGAAGGACAAGGATTCTAAATTCAGGTTGATTTTGGTTGAGAGCAGGATTCACCGCCTTGCTTGTTAA 285 0.414 VEENICKFAKKGLAPSQLSVILRDSWNCSSEKVIRSKILHILKAHGLAPEIPEDPYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHRLAC 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1160 94 Gene3D - 50 94 - -
Aed2g1160 94 SUPERFAMILY S15/NS1 RNA-binding domain 35 93 IPR009068 -
Aed2g1160 94 Gene3D - 3 49 - -
Aed2g1160 94 Pfam Ribosomal S13/S15 N-terminal domain 1 25 IPR012606 GO:0003735|GO:0005840|GO:0006412
Aed2g1160 94 SMART Ribosomal_S15_2 37 93 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aed2g1160 94 CDD Ribosomal_S15p_S13e 37 93 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aed2g1160 94 PANTHER 40S RIBOSOMAL PROTEIN S13 1 93 - -
Aed2g1160 94 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 93 IPR023029 -
Aed2g1160 94 Pfam Ribosomal protein S15 42 92 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1160 Aed-Chr2 9690894 9691265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1160 1 93 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 80.851 1.10e-46 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1160 K02953 - jre:109011357 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2123 9 24425863 24426675 Aed2g1160 2 9690894 9691265 PCT