Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed2g1151 | ATGCACAAGTCCTTCAAGGATTCTCTCAAAGCTCTTGAAGCTGATATTCAGTTCGCCAATACTCTGGCTTCTGATTATCCAAGAGAATGTGATGGTGCCTGTGTACAAATGAGATTGTCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTATATGAGGATGGGAAGACAACCATGTCTATTTATGAAAGGAAAGCCAGTCTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACACCTCCACAGAGGGATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCTAAAGATATAATAAGGAAAGGAAAAATATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCAATTGCAATCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTGAATCTTGCCCTTTCTGTCGGGATACACTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGACAGATGACTTGGCTTCAATCAACAAGGAGAATCTAAGAAGACTATTTATCTACATTGACAAGTTACCTCTAATTGTGCCAGATCATATGTTCAAGACTCATCATCAGCGCTTTTGA | 663 | 0.3891 | MHKSFKDSLKALEADIQFANTLASDYPRECDGACVQMRLSYSPAAQFFLFLVYEDGKTTMSIYERKASLKEFYGVIFPSLLHLHRGISDVEERKQKDLCATKYKPKDIIRKGKISEIDIEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSESCPFCRDTLQRVNSGDLWIYMNSNETDDLASINKENLRRLFIYIDKLPLIVPDHMFKTHHQRF | 220 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed2g1151 | 220 | ProSitePatterns | Zinc finger RING-type signature. | 140 | 149 | IPR017907 | - | |
Aed2g1151 | 220 | SMART | ring_2 | 125 | 162 | IPR001841 | - | |
Aed2g1151 | 220 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 163 | IPR001841 | - | |
Aed2g1151 | 220 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE AIRP2 | 1 | 52 | - | - | |
Aed2g1151 | 220 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE AIRP2 | 52 | 219 | - | - | |
Aed2g1151 | 220 | Pfam | Zinc finger, C3HC4 type (RING finger) | 122 | 168 | - | - | |
Aed2g1151 | 220 | SUPERFAMILY | RING/U-box | 113 | 168 | - | - | |
Aed2g1151 | 220 | PANTHER | RING FINGER PROTEIN 41, 151 | 1 | 52 | - | - | |
Aed2g1151 | 220 | PANTHER | RING FINGER PROTEIN 41, 151 | 52 | 219 | - | - | |
Aed2g1151 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 172 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed2g1151 | Aed-Chr2 | 9571321 | 9574803 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed2g1151 | 73 | 163 | C3H Transcription Factor Family | AT5G01960 | 29.167 | 3.62e-07 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed2g1151 | K25840 | - | gmx:100819267 | 363.614 |