Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1151 ATGCACAAGTCCTTCAAGGATTCTCTCAAAGCTCTTGAAGCTGATATTCAGTTCGCCAATACTCTGGCTTCTGATTATCCAAGAGAATGTGATGGTGCCTGTGTACAAATGAGATTGTCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTATATGAGGATGGGAAGACAACCATGTCTATTTATGAAAGGAAAGCCAGTCTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACACCTCCACAGAGGGATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCTAAAGATATAATAAGGAAAGGAAAAATATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCAATTGCAATCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTGAATCTTGCCCTTTCTGTCGGGATACACTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGACAGATGACTTGGCTTCAATCAACAAGGAGAATCTAAGAAGACTATTTATCTACATTGACAAGTTACCTCTAATTGTGCCAGATCATATGTTCAAGACTCATCATCAGCGCTTTTGA 663 0.3891 MHKSFKDSLKALEADIQFANTLASDYPRECDGACVQMRLSYSPAAQFFLFLVYEDGKTTMSIYERKASLKEFYGVIFPSLLHLHRGISDVEERKQKDLCATKYKPKDIIRKGKISEIDIEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSESCPFCRDTLQRVNSGDLWIYMNSNETDDLASINKENLRRLFIYIDKLPLIVPDHMFKTHHQRF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1151 220 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
Aed2g1151 220 SMART ring_2 125 162 IPR001841 -
Aed2g1151 220 ProSiteProfiles Zinc finger RING-type profile. 125 163 IPR001841 -
Aed2g1151 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 1 52 - -
Aed2g1151 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 52 219 - -
Aed2g1151 220 Pfam Zinc finger, C3HC4 type (RING finger) 122 168 - -
Aed2g1151 220 SUPERFAMILY RING/U-box 113 168 - -
Aed2g1151 220 PANTHER RING FINGER PROTEIN 41, 151 1 52 - -
Aed2g1151 220 PANTHER RING FINGER PROTEIN 41, 151 52 219 - -
Aed2g1151 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 172 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1151 Aed-Chr2 9571321 9574803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1151 73 163 C3H Transcription Factor Family AT5G01960 29.167 3.62e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1151 K25840 - gmx:100819267 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1151 2 9571321 9574803 Aed2g1151 2 9571321 9574803 ECH