Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1134 ATGGAAATGGCCTCCACTCCCCGCACCGTCGAAGAGATCTTCAAGGACTATACCTCCCGCCGCACCGCCATCGTTCGCGCTCTCTCTCAAGATGTAGATGAATTCTACGGACTCTGCGATCCAGCGGAGGAAGTGCCGCCAGAGCTTCCCGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGTATGAACCGTAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTCTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAACGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTAAAAGACAAGCCCACTGCAGACAGTGGAAGCAAGTCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGTAACCCAAAGTTTGCAGAGGAAGGTTATGAAGAGGAGGAGGACGAGCACAGCGAAACCCTTTGTGGGAGCTGCGGAGGACACTACAACGCAGATGAGTTTTGGATTGGTTGCGACATATGCGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACCCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGAGGAAGGCCCTAA 660 0.4985 MEMASTPRTVEEIFKDYTSRRTAIVRALSQDVDEFYGLCDPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFAEEGYEEEEDEHSETLCGSCGGHYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1134 219 Pfam PHD-finger 166 213 IPR019787 -
Aed2g1134 219 PANTHER CPG BINDING PROTEIN 41 218 IPR045104 GO:0006355|GO:0042393
Aed2g1134 219 ProSiteProfiles Zinc finger PHD-type profile. 163 215 IPR019787 -
Aed2g1134 219 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 41 218 - -
Aed2g1134 219 ProSitePatterns Zinc finger PHD-type signature. 166 212 IPR019786 -
Aed2g1134 219 MobiDBLite consensus disorder prediction 128 145 - -
Aed2g1134 219 SMART PHD_3 165 213 IPR001965 -
Aed2g1134 219 MobiDBLite consensus disorder prediction 117 157 - -
Aed2g1134 219 SUPERFAMILY FYVE/PHD zinc finger 154 217 IPR011011 -
Aed2g1134 219 CDD PHD_AL_plant 165 215 IPR044104 -
Aed2g1134 219 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 41 - -
Aed2g1134 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 213 IPR013083 -
Aed2g1134 219 PANTHER CPG BINDING PROTEIN 3 41 IPR045104 GO:0006355|GO:0042393
Aed2g1134 219 Pfam Alfin 41 114 IPR021998 GO:0006355|GO:0042393
Aed2g1134 219 Pfam Alfin 9 43 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1134 Aed-Chr2 9383603 9386939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1134 4 218 Alfin-like Transcription Factor Family AT5G05610 66.949 2.58e-105 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aed2g1134 Alfin 4.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1134 - - gmx:100793126 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1134 2 9383603 9386939 Aed2g1134 2 9383603 9386939 ECH
Aed9g2016 9 23429950 23438020 Aed2g1134 2 9383603 9386939 PCT