Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1087 ATGGATCAAAACACTCCTTACTCTACTACTACTACTATTACTACTAACAGGAACATAACCAGCAACAACAAGGAGAGCAAAAAGGGTACTACCGGTGCCAGAAAATGCAAAAGGTCGTCTTCGCTGTCATCGACACCGAGGCTCTCGACCGACCCGCAAAGCGTGGCGGCGAGAGAGAGGAGGCACAGAATCAGCGACAGGTTCAAGATCCTGCAGAGCATGGTCCCCGGCGGGAGCAAGATGGACACGGTGTCCATGCTGGAAGAGGCCATTCAGTATGTGAAATTCCTCAAGGCCCAGATTTGGCTCCACCAAACCATTATCAACTTTATCGATAATAACGATCATAACATTAATGAGTCTTCTTCTTCATTACCCTCACCTATGTACCCTAATTACAATGATTATTGCTGCTATGATAATTTCCCTTCTCAACAACAACAGTTCGTTTCCCCTCATCAGCAGAATGCAACAACGTTTGATTATAACATTAACAGCATGCAGAGTTCGCCGCCACAATTCAGCTTCCAAGGTGAAGACACCACCTATTTTGATGATGCCTCTTTGAAATATTGGCCAGCTTAA 585 0.453 MDQNTPYSTTTTITTNRNITSNNKESKKGTTGARKCKRSSSLSSTPRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKAQIWLHQTIINFIDNNDHNINESSSSLPSPMYPNYNDYCCYDNFPSQQQQFVSPHQQNATTFDYNINSMQSSPPQFSFQGEDTTYFDDASLKYWPA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1087 194 Pfam Helix-loop-helix DNA-binding domain 58 97 IPR011598 GO:0046983
Aed2g1087 194 Gene3D - 52 106 IPR036638 GO:0046983
Aed2g1087 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Aed2g1087 194 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 179 IPR045843 GO:0003700|GO:0006355
Aed2g1087 194 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 26 179 - -
Aed2g1087 194 SMART finulus 54 103 IPR011598 GO:0046983
Aed2g1087 194 MobiDBLite consensus disorder prediction 1 27 - -
Aed2g1087 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 107 IPR036638 GO:0046983
Aed2g1087 194 MobiDBLite consensus disorder prediction 1 60 - -
Aed2g1087 194 CDD bHLH_AtIND_like 49 106 - -
Aed2g1087 194 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1087 Aed-Chr2 8768668 8769252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1087 47 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.500 2.30e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g1087 HLH 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1087 - - gmx:102667489 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1087 2 8768668 8769252 Aed2g1087 2 8768668 8769252 ECH