Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1082 ATGGAAGAAGAAAGCCGTGGCTCACAATGTTCCAAGACAAGTCTTTCTAATAACATTGATGAAGAGGAAGAGGAGGAGGAAGAGTGTGAAAGCAAGCAAAACAATAACAATGGAGGAAGCTCAAGTAACAGCACAGTGGAAGAGGAGAATGAGAAAAAGATGATAAGGCCTTATGTTAGATCCAAGATGCCAAGGCTTCGGTGGACACCTGATCTACATCTTCGCTTTCTTCATGCTGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCAAAATTGGTTCTTCAATTGATGAACATCAAAGGTTTGAGTATTTCCCATGTCAAGAGTCATTTACAGGATCATAACAGACTTGAAATTGGAGACAAAAATATTTACAATTTTAGCCAACTTTCCATGCTTCAAGGGTACAATCCAAGTCAAAGTTCATCCTTCAGCTACAAAAATAATCATCCAAGCTATGGATTCAGGGATAATGCTTCAAATTTTGGTGTCTACCAAAAACTGCTACAAAGACCTTCTTTTGATTGGTCTAATGGAACTTCGAATTCTCGGGAAGGTTCAACAATTTTTGGTGATCAACAAAGTAAAATCCGTGAACCAAATAAAGATGAGTTTCTCTCATTTGGTGCTTATGATCACACTCCACCAATCATCAATATCATGCAGCAACAAAGAGCACAAAAAAATCTCATGCCAACAACAACAAATGCACCACAATTGAACACATTAAAAAGGAAAGCTTCAGATACAACCCTTGATTTGGATCTGTCTCTAAAACTAAACTCAAAGATTGATGATGCTGCTGAAGAAGTAATTGATAGCAACCTATTATCACTCTCATTGTGCTCTCAATCCTCTATTAATATTCCTAGCAGAAGATTGAAGAAGGAAGCACTACAACAAGATCAAGGAAAAATGGCCAGTACTCTAGATCTGACTATGTGA 948 0.3797 MEEESRGSQCSKTSLSNNIDEEEEEEEECESKQNNNNGGSSSNSTVEEENEKKMIRPYVRSKMPRLRWTPDLHLRFLHAVQRLGGQERATPKLVLQLMNIKGLSISHVKSHLQDHNRLEIGDKNIYNFSQLSMLQGYNPSQSSSFSYKNNHPSYGFRDNASNFGVYQKLLQRPSFDWSNGTSNSREGSTIFGDQQSKIREPNKDEFLSFGAYDHTPPIINIMQQQRAQKNLMPTTTNAPQLNTLKRKASDTTLDLDLSLKLNSKIDDAAEEVIDSNLLSLSLCSQSSINIPSRRLKKEALQQDQGKMASTLDLTM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1082 315 MobiDBLite consensus disorder prediction 177 197 - -
Aed2g1082 315 SUPERFAMILY Homeodomain-like 62 116 IPR009057 -
Aed2g1082 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 120 IPR017930 -
Aed2g1082 315 Pfam Myb-like DNA-binding domain 66 115 IPR001005 -
Aed2g1082 315 Gene3D - 63 119 - -
Aed2g1082 315 Coils Coil 12 35 - -
Aed2g1082 315 MobiDBLite consensus disorder prediction 1 57 - -
Aed2g1082 315 MobiDBLite consensus disorder prediction 177 196 - -
Aed2g1082 315 PANTHER - 228 315 - -
Aed2g1082 315 PANTHER - 5 169 - -
Aed2g1082 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 228 315 IPR044848 GO:0003700
Aed2g1082 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 5 169 IPR044848 GO:0003700
Aed2g1082 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 64 113 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1082 Aed-Chr2 8728083 8729729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1082 55 113 G2-like Transcription Factor Family AT2G42660 77.966 5.26e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed2g1082 Myb_DNA-binding 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1082 - - gmx:102660246 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2055 9 23790251 23791808 Aed2g1082 2 8728083 8729729 ECH
Aed2g1082 2 8728083 8729729 Aed2g1082 2 8728083 8729729 ECH
Aed9g2055 9 23790251 23791808 Aed2g1082 2 8728083 8729729 PCT