Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1080 ATGGGTTCAAACAACTTGCCAAACTTGAACAATGTCGCTAAGAAGACCAGAGGTCAGCAAAAGATCGAGATGAAGAAGATGAGCAACAAGAGTAACCTTCGAGTGACATTCTTAAAGCGTCGCACTGGGATTTTTAAAAAGGCGAGTGAGCTTGCAATCCTTTGCAACATGGACCTCACTGTGATTTTGTTCGCACCTAGTGATCGAGTTTTTTCATTTGGTAGCCCTAATGACCTCAACGAGGCCTACTCCACCGTGGACGAAGGTGAGCTCCACGCACAACTTAACTACTTATCCAACCAAATTGTTGTAGGGAAGAAGCGCTTAGAAGATATAAACCGTTTGTTGAAGGTTGCAAAGGATCATTCCTATTGA 375 0.4347 MGSNNLPNLNNVAKKTRGQQKIEMKKMSNKSNLRVTFLKRRTGIFKKASELAILCNMDLTVILFAPSDRVFSFGSPNDLNEAYSTVDEGELHAQLNYLSNQIVVGKKRLEDINRLLKVAKDHSY 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1080 124 Gene3D - 29 100 IPR036879 GO:0003677|GO:0046983
Aed2g1080 124 SUPERFAMILY SRF-like 18 85 IPR036879 GO:0003677|GO:0046983
Aed2g1080 124 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Aed2g1080 124 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Aed2g1080 124 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Aed2g1080 124 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Aed2g1080 124 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Aed2g1080 124 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 115 - -
Aed2g1080 124 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Aed2g1080 124 PANTHER MADS BOX PROTEIN 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1080 Aed-Chr2 8712333 8712764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1080 12 77 Type I MADS-box Gene Family AT5G60440 59.091 6.09e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed2g1080 SRF-TF 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1080 - - gmx:100808929 162.155