Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1063 ATGCAGCGCCATGTTCTTGTTGACGGCAAGGTTAGGACAGACAAGACATATCCTGCTGGTTTCATGGATGTTGTTACTATTCCCAAAACAAATGAAAGTTTCCGTCTTCTGTATGACACAAAGGGCCGTTTCCGTCTCCACTCTGTCAGAGATGAAGAGTCAAAGTTTAAGCTTTGTAAGGTTCGATCTGTTCAATTTGGGCAGAAGGGCATCCCCTATTTGAACACATATGATGGCCACACCATCCGCTACCCTGACCCACTAATCAAGGCCAATGACACCATCAAGCTGGACCTTGAAAGCAACAAGATCACTGATTCCATCAAATTTGATGTGGGGAATGTTGTTATGGTCACCGGCGGAAGGAATAGAGGCCGTGTTGGCGTCATCAAGAGCCGAGAGAAGCAGAAGGGAAGCTTTGAGACCATCCATGTCCAGGATGCAACTGGTCATGAGTTTGCAACTCGATTGGGTAATGTCTTCACTATCGGCAAAGGGACAAAGCCTTGGGTGTCTCTTCCCAAAGGCAAGGGTATCAAGTTGTCTATCATTGAAGAGGCTAGAAAGAGGCTTGCTGCTGCACAAAATGAAACAGTTGCCTAA 603 0.4643 MQRHVLVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPYLNTYDGHTIRYPDPLIKANDTIKLDLESNKITDSIKFDVGNVVMVTGGRNRGRVGVIKSREKQKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAAAQNETVA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1063 200 PANTHER 40S RIBOSOMAL PROTEIN S4 1 155 - -
Aed2g1063 200 PANTHER 40S RIBOSOMAL PROTEIN S4 156 198 - -
Aed2g1063 200 Gene3D - 110 180 IPR014722 -
Aed2g1063 200 SMART kow_9 109 136 IPR005824 -
Aed2g1063 200 Gene3D - 57 107 IPR038237 -
Aed2g1063 200 Pfam Ribosomal family S4e 30 104 IPR013845 -
Aed2g1063 200 Gene3D - 1 52 IPR036986 GO:0003723
Aed2g1063 200 CDD S4 1 47 - -
Aed2g1063 200 Pfam KOW motif 112 145 IPR005824 -
Aed2g1063 200 CDD KOW_RPS4 110 164 IPR041982 -
Aed2g1063 200 Pfam 40S ribosomal protein S4 C-terminus 147 193 IPR032277 -
Aed2g1063 200 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 155 IPR000876 GO:0003735|GO:0005840|GO:0006412
Aed2g1063 200 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 156 198 IPR000876 GO:0003735|GO:0005840|GO:0006412
Aed2g1063 200 ProSiteProfiles S4 RNA-binding domain profile. 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1063 Aed-Chr2 8585886 8588688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1063 1 195 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 88.718 9.71e-132 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1063 K02987 - gmx:100801792 366.696