Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1057 ATGAAGCAAGTGGTGGGAATGGTGGTTTCAAATAAGATGCAGAAATCAGTGGTAGTGGCAGTGGATAGACTATTCTACCACAAAGTGTATGACCGATATGTCAAGCGCACTTCGAAGTTTATGGCTCATGACGAGCTCAATCATTGTAACATTGGCGACCGGGTTCGGTTGAATCCTTCTAGGCCTTTGAGCAAGCATAAAAATTGGGTGGTTGCTGAAATTCTCAAGAAAGCAAGGATATATGTTCCACCATCGACACCGTCAGTGCCTGAGAATGTGAGGTTGCACTCTAAAGCACCTGCATCCTGA 309 0.4498 MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDELNHCNIGDRVRLNPSRPLSKHKNWVVAEILKKARIYVPPSTPSVPENVRLHSKAPAS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1057 102 Gene3D - 1 96 IPR012340 -
Aed2g1057 102 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed2g1057 102 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed2g1057 102 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed2g1057 102 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 88 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed2g1057 102 SUPERFAMILY Nucleic acid-binding proteins 2 94 IPR012340 -
Aed2g1057 102 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed2g1057 102 TIGRFAM uS17_bact: ribosomal protein uS17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Aed2g1057 102 PANTHER 37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL 1 88 - -
Aed2g1057 102 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1057 Aed-Chr2 8485784 8488478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1057 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 38.028 2.40e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1057 K02961 - gmx:100794499 173.326