LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g1056	ATGAAACTTTCTTCATTTCTGTGTCTCGTTTTCATATTTCATAATTATAATCACTTCTTCTTTACTCCCTCACTCTCTTTGTCCTCCGATGGGCTTGCACTTCTCGCTTTGAAGTCCGCCATCGACGAGCCGTCCGCCGCGTTCTCCGACTGGAACAACGGCGACTCCACGCCGTGCGCCTGGTCGGGGATCGCCTGCGCCAACATCTCCGGCGAGGCGGAGCCGCGAGTGGTCGGAATCTCCCTCGCCGGAAAAGCTCTCTCCGGCTACCTCCCCTCGGAGCTCGGCACGCTGCGGTTCCTCCGGCGGCTGAACCTCCACGACAACGCATTCTCCGGCGTGCTCCCGGCGCAGCTCTCCAATGCCACCGCGCTCCACAGCCTCTTCCTCCACGGCAACAACCTCTCCGGCGCGATTCCCTCCTCCATCTGCACCCTCCCCCGCCTCCAAAACCTCGACCTCTCCGAGAACGCCTTCTCCGGTCACGTCCCCGACCACCTCAAAAACTGCGAGAATCTCCAGCGCCTCATCCTCGCCGGCAACAAATTCTCCGGCGAGATTCCCGCCGGCGTGTGGCCGGAGCTCCGGAACCTCTTCCAACTCGACCTCTCCGACAACGAGTTAACTGGCTTCATCCCCAGCGAACTCGGAACCCTAATTTCCCTCTCCGGCACGCTGAACCTCTCCTTCAACCACCTCTCCGGTGAAATTCCAACTTCCTTAGGAAAACTACCGGCAACAGTGAGCTTTGACTTAAAAAACAACAACCTCAGCGGCGAAATTCCCCAGACGGGATCCTTTTCGAATCAGGGTCCCACTGCGTTCCTCGGAAACCCGGACTTATGCGGGTTTCCGCTCAGAAAATCATGTTCCGGTCCGAATCGGAATTTTTCTCCCGGCTCGGACCAGAACCAGCCGGGTGGCAACCGGTCAAAGGGGTTGAGCCCTGGGTTGATAATTCTAATCTCGGTGGCGGATGCTGCTGTGGTGGCCCTCATTGGGCTTGTGATTGTTTACATTTACTGGAAGAGAAAGGATGATGAGAATGGTTGTAGTTGCATTAGGAAGAGGAGTTTTGGTGAAGAGAGAGGGAAGAACATGTGTTTATGTGGTGGGGTGAAGAGTGATGATGATGATGAAGATTATGAGGGTGGTGAGGGTGATGGTGAAGGTGAAGGGGAATTGGTGAGGATTGACAAGGGTTTGAGTTTTGAGCTTGATGAGTTGTTGAGGGCTTCAGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATAGTGTACAAGGTGGTGTTGGGGAATGGGGTGCCTGTGGCTGTGAGGAGGTTGGGGGAGGGTGGAGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTATGGCCATTGGGAAGGTCAAGCACCCTAATGTTGTGAGGCTTAGGGCTTACTATTGGGCTCATGATGAGAAGCTTCTCATAAGTGATTTCATCTCCAATGGCAATTTGGCTCATGCCCTTAGAGGTCAACTAAGAATCGCCAAAGGAACAGCCAGAGGCTTGGCCTATATCCACGAATGCAGTCCAAGAAAATTCGTGCACGGCGACATCAAGCCCTCCAACATACTCCTTGACAACGACTACAAGCCATACGTATCCGACTTTGGGCTAAACCGCCTCATCAGCATCACCGGCAACAACCCCTCCACGGGTGGGCTCATGGGAGGAGCCCTCCCTTACATGAACTCCTCACAGAAAGAGAGAACCAACAACTACAAGGCCCCTGAGGCTCGCGTCCCCGGCTGCAGACTGACGCAGAAATGGGATGTGTACTCGTTTGGGGTGGTTCTGCTCGAAATACTAACCGGCAGGTCACCGGAGTCGTCCCCGACCACATCAACTTCCATGGAAGTCCCTGACTTGGTGAGGTGGGTGAGGAAAGGGTTCGATCAAGAAAGCCCTTTATCTGAAATGGTTGATCCGTCGCTGCTGCAAGAAGTGCGCGTCAAGAAAGAGGTTCTGGCTGTGTTTCATGTTGCACTTGCTTGCACTGAGGGAGACCCTGAGGCTCGGCTTAGGATGAAAACTGGTTTTGTTGATGCAACTCGAAGGATTTAG	2085	0.541	MKLSSFLCLVFIFHNYNHFFFTPSLSLSSDGLALLALKSAIDEPSAAFSDWNNGDSTPCAWSGIACANISGEAEPRVVGISLAGKALSGYLPSELGTLRFLRRLNLHDNAFSGVLPAQLSNATALHSLFLHGNNLSGAIPSSICTLPRLQNLDLSENAFSGHVPDHLKNCENLQRLILAGNKFSGEIPAGVWPELRNLFQLDLSDNELTGFIPSELGTLISLSGTLNLSFNHLSGEIPTSLGKLPATVSFDLKNNNLSGEIPQTGSFSNQGPTAFLGNPDLCGFPLRKSCSGPNRNFSPGSDQNQPGGNRSKGLSPGLIILISVADAAVVALIGLVIVYIYWKRKDDENGCSCIRKRSFGEERGKNMCLCGGVKSDDDDEDYEGGEGDGEGEGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLAHALRGQLRIAKGTARGLAYIHECSPRKFVHGDIKPSNILLDNDYKPYVSDFGLNRLISITGNNPSTGGLMGGALPYMNSSQKERTNNYKAPEARVPGCRLTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEARLRMKTGFVDATRRI	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g1056	694	Gene3D	Transferase(Phosphotransferase) domain 1	487	692	-	-
	Aed2g1056	694	SUPERFAMILY	Protein kinase-like (PK-like)	416	684	IPR011009	-
	Aed2g1056	694	SMART	serkin_6	415	694	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed2g1056	694	Gene3D	Ribonuclease Inhibitor	192	292	IPR032675	-
	Aed2g1056	694	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	521	533	IPR008271	GO:0004672\|GO:0006468
	Aed2g1056	694	Gene3D	Phosphorylase Kinase; domain 1	403	486	-	-
	Aed2g1056	694	Gene3D	Ribonuclease Inhibitor	27	191	IPR032675	-
	Aed2g1056	694	Pfam	DNA binding protein S1FA	310	345	IPR006779	GO:0003677\|GO:0005634\|GO:0006355
	Aed2g1056	694	ProSiteProfiles	Protein kinase domain profile.	411	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed2g1056	694	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	7	685	-	-
	Aed2g1056	694	Pfam	Protein kinase domain	416	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed2g1056	694	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	7	685	-	-
	Aed2g1056	694	SUPERFAMILY	L domain-like	27	287	-	-
	Aed2g1056	694	Pfam	Leucine rich repeat N-terminal domain	28	66	IPR013210	-
	Aed2g1056	694	Pfam	Leucine rich repeat	147	208	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g1056	Aed-Chr2	8470257	8483483	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g1056	22	684	Receptor kinase-like Gene Family	AT1G67510	65.850	0.0	892

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Aed2g1056		Pkinase	1.2e-29	CL0016
	TF	S1Fa-like	Aed2g1056		Pkinase	1.2e-29	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g1056	-		-	gmx:100793996	1195.65