Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1018 ATGCAGCCAAGAGCAAGTAGTGTTGGAAATGGTTTTCGAACAAGTGTCTCAAGTTTTGCACCTAGCAATTTATGTGGTGGATCAGAGCAAGATGACACAGATTCATTTGGTGATATCTACATATGGGGTGAATTTTTGGCAAATGGGGTTTCATCTGATGGCAATGTTGAAACTCAAATCCCTTCTAAGACAGATGTGTTGATTCCAAAGCCTTTGGACTCAAAAATTGTTCTTGATGTTTGTCACATATCAGCAGGCACACACCACATTGGTATAGTAACAAAGCAAGGAAATGTCTTCACTTGGGGGAAAGAATCAGGTGGAAGACTTGGTCATGGATATGACAAAGACTATGACTCACCTTATCAAGTTAAGTTCCTAGACGGCGAGGCGAATTTCGACATTGTTTCATGTGGAGAGTTTCACACAGGTGCTGTATCAAAATCCTATGAACTCTTCATGTGGGGTGATGGAACACACAATGTTGGACTTCTAGGACTTGGTTCTCAGGTTGGCCATTGGATACCAAAAGTGGTGAATGGTCCTTTGGAAGGACTTCAAGTTGTGTCCATTGCTTGTGGAACATGGCACTCAGCATTGGCAACTTCATGTGGGAAACTCTTCACCTTTGGTGATGGTGCATTTGGTGTATTAGGCCATGGAGATCAAGAGAGTGTATGTTATCCAAAAGAGGTGCAACTATTGAGTGGACTCAAGACTATAAAAGTTGCATGTGGAGTTTGGCACACAGCAGCTATCATAGAGGTTGCATTTCAATCTGGCTTAGACACTTCATCAAGGAAGCTTTTCACATGGGGTAATGGAGATAAACATCGTTTGGGACATGGAGACAAGGAAACTTATCTTCAACCGACACGTGTTGCGCCACTTATGGAGTATAACTTCCTCCAAGTGGCATGTGGTAACACAATGACAGTTGCTCTAACTACTTCTGGTCATGTCTTTAGTATGGGAGGAGCAGAAAATGGTCAATTAGGAAATCCTAAGTCTGTTGGAAAAATACCAACTTTGGTCCAAGATAAGTTGCTTGGTGAGTTTGTTGAGAATATATCATGTGGAACACACCATGTTGCTGCATTGACAGTAAAGAGTGAACTTTACACATGGGGAATGGGTGCAAATGGGAGATTAGGACATGGTGATGTAGAAGATAAGAAAACTCCTACATTGGTTGTGGCCTTAAAAGACAGGCGCATAAAAAATGTGTCATGTGGCTCTAGCTTTACATCATGCATTTGCATCCATACGTGGATTTCTGGGACAGACCAATCTGTTTGCTATGGTTGTAGACTAGCATTTGGTTTAACAAGGAAAAGACATAATTGTCACCATTGTGGATTGGTCTTTTGCCATGCTTGTAGTCCTAAAAAGGCTTATAAAGCAGCATTGACTCCAACACCAGAGAAGCTACATCGTGTGTGTGATAACTGTTATGTTAAGCTTAAAGTTGTTGACGATAATAATAATGTTGCTGCTTCCAAGTTGTTAGATAGAAAAGATAATCCTTCTATTTATTCCACAAATGGTAAAGAAAGGTTAGGCCAAGGAACAATAAGGTCCACGACCACAAGAACTCTCTTATCTCCAATCACTGAACCAATTAAGTGCCTTGAGATAAAGAACATTGGTCTTGGAAGCAAAGATGATTCTACTTCATTTATTAAAGCTTCTCAAGTTCCATCTCTTGTACAATTGAAAGATATTGCATTTCCAAGTTCACTTAGCTCTTATCAAAATATGTTGAAGTCTGCTTTACCTCTTAGTCCATCACAAACTCCACCACCACCACCACAAACCAATTCATCAGAGCCAATATTCACAAACACAGGAAGACAAATCCCTACACGTCTTGCTAGTCCTACATACTTAGGAACTCTTAACAACAATTTAAGAAGGACAAATGATATTAAAAGTTTGAAGCAGAGAAGTGACATTCAAGATGTAGAAATTAAGAAGCTTAACAAAAAGGCTATGGACGCTGCTGCCTTTTCTGCAGTGGAATCTTCTAATCATAGAGTAGCACAAGAGTTTTTTGAATCTACTTTATATAAGTTGAAGGAAATGACTGAGAAGCTGCCACAAGAAATTCCAGAAATTGAAACTTTGAGAACTGTGGTTATTCAAGCTGAAAATTTTCTTAAGGAAAATTTAGGATCAGAAACATCTTCATCATCAAAGTTGGACTCTAAGCAACAAAATGCACCTGATATACCTAGCTTGAATAATGGCTCTTGTGAACTACAAAAAAATAGAGTTGAAGAAGAAAATGTGGATGCTGCAGGAGTCAATCCTTGTCAAGATGAAGGAAAATCCCTTGAAGAAAGCAGTGAATCAAACTTGCAACCAAAACAAGAAAATGCACTTGATGTACCAACCTTAGATGGTGTATATTCCAACCTGCAAAAACAAAGAATAGAAGAAAATGTGGATTTTGTTGAAGAAAAATTCCTTGAAGAAAGCAATAACTCAGAGTTGGAGTCTAGGCAACAAAATACACCTACTTCAGATACTAACACTTCTGAAATGCAAGAACACAAACTAGAGGAAAATGTTGATACTGTAGAAGTTGACTCTTGTCAAGATAGGGAAAATTTCCTTGAAGAAATTAATATTGGAACAAAGTTGGAGATTAAGCAGCAAAATGCAGCTAATATACTTGCCTCAATGCGTGATGTTTCTGAATTTGTTGCTGATCATTCTCATGCAGAAGGATATGTCCCTCAAGAATGTAATGGTATATTTGCACAAAACTCAGACAATCATTCAAGATCATTGAACAATTCAAGACTTGGGAAACAAGGAGAGACACAAGTTATTGAAAAATTTGACCATGGTGTTTATGTCATACTCATGTTACTATCTGATGGTACCAAAGTTTTTAAACGAGTTAAATTCAGTAAACGAAGGTTCACTGAAAATCAAGCAGAAGAATGGTGGAACCAAAACAAAGGTAGGGTTCATAGAGAATATTGTCCAACACATCCAAAAATAACAATTGGACCATCTAATGTCACAACACATGTTAAAGAAATTATTGAACCATCTCCTGAATAG 3075 0.3821 MQPRASSVGNGFRTSVSSFAPSNLCGGSEQDDTDSFGDIYIWGEFLANGVSSDGNVETQIPSKTDVLIPKPLDSKIVLDVCHISAGTHHIGIVTKQGNVFTWGKESGGRLGHGYDKDYDSPYQVKFLDGEANFDIVSCGEFHTGAVSKSYELFMWGDGTHNVGLLGLGSQVGHWIPKVVNGPLEGLQVVSIACGTWHSALATSCGKLFTFGDGAFGVLGHGDQESVCYPKEVQLLSGLKTIKVACGVWHTAAIIEVAFQSGLDTSSRKLFTWGNGDKHRLGHGDKETYLQPTRVAPLMEYNFLQVACGNTMTVALTTSGHVFSMGGAENGQLGNPKSVGKIPTLVQDKLLGEFVENISCGTHHVAALTVKSELYTWGMGANGRLGHGDVEDKKTPTLVVALKDRRIKNVSCGSSFTSCICIHTWISGTDQSVCYGCRLAFGLTRKRHNCHHCGLVFCHACSPKKAYKAALTPTPEKLHRVCDNCYVKLKVVDDNNNVAASKLLDRKDNPSIYSTNGKERLGQGTIRSTTTRTLLSPITEPIKCLEIKNIGLGSKDDSTSFIKASQVPSLVQLKDIAFPSSLSSYQNMLKSALPLSPSQTPPPPPQTNSSEPIFTNTGRQIPTRLASPTYLGTLNNNLRRTNDIKSLKQRSDIQDVEIKKLNKKAMDAAAFSAVESSNHRVAQEFFESTLYKLKEMTEKLPQEIPEIETLRTVVIQAENFLKENLGSETSSSSKLDSKQQNAPDIPSLNNGSCELQKNRVEEENVDAAGVNPCQDEGKSLEESSESNLQPKQENALDVPTLDGVYSNLQKQRIEENVDFVEEKFLEESNNSELESRQQNTPTSDTNTSEMQEHKLEENVDTVEVDSCQDRENFLEEINIGTKLEIKQQNAANILASMRDVSEFVADHSHAEGYVPQECNGIFAQNSDNHSRSLNNSRLGKQGETQVIEKFDHGVYVILMLLSDGTKVFKRVKFSKRRFTENQAEEWWNQNKGRVHREYCPTHPKITIGPSNVTTHVKEIIEPSPE 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1018 1024 Coils Coil 809 829 - -
Aed2g1018 1024 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 243 253 IPR000408 -
Aed2g1018 1024 PRINTS Chromosome condensation regulator RCC1 signature 99 115 IPR000408 -
Aed2g1018 1024 PRINTS Chromosome condensation regulator RCC1 signature 366 387 IPR000408 -
Aed2g1018 1024 PRINTS Chromosome condensation regulator RCC1 signature 191 207 IPR000408 -
Aed2g1018 1024 PRINTS Chromosome condensation regulator RCC1 signature 308 326 IPR000408 -
Aed2g1018 1024 PRINTS Chromosome condensation regulator RCC1 signature 150 166 IPR000408 -
Aed2g1018 1024 PRINTS Chromosome condensation regulator RCC1 signature 207 221 IPR000408 -
Aed2g1018 1024 Pfam Regulator of chromosome condensation (RCC1) repeat 205 253 IPR000408 -
Aed2g1018 1024 Pfam Regulator of chromosome condensation (RCC1) repeat 152 200 IPR000408 -
Aed2g1018 1024 Pfam Regulator of chromosome condensation (RCC1) repeat 269 315 IPR000408 -
Aed2g1018 1024 Pfam Regulator of chromosome condensation (RCC1) repeat 372 419 IPR000408 -
Aed2g1018 1024 Pfam Regulator of chromosome condensation (RCC1) repeat 318 367 IPR000408 -
Aed2g1018 1024 Pfam Regulator of chromosome condensation (RCC1) repeat 97 146 IPR000408 -
Aed2g1018 1024 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1003 - -
Aed2g1018 1024 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 318 IPR000408 -
Aed2g1018 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 494 IPR013083 -
Aed2g1018 1024 CDD FYVE_like_SF 433 485 - -
Aed2g1018 1024 SMART fyve_4 421 490 IPR000306 GO:0046872
Aed2g1018 1024 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Aed2g1018 1024 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 1003 - -
Aed2g1018 1024 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 256 IPR000408 -
Aed2g1018 1024 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 150 204 IPR000408 -
Aed2g1018 1024 SUPERFAMILY RCC1/BLIP-II 37 424 IPR009091 -
Aed2g1018 1024 MobiDBLite consensus disorder prediction 830 847 - -
Aed2g1018 1024 Gene3D - 261 436 IPR009091 -
Aed2g1018 1024 Gene3D - 28 260 IPR009091 -
Aed2g1018 1024 SUPERFAMILY FYVE/PHD zinc finger 423 499 IPR011011 -
Aed2g1018 1024 MobiDBLite consensus disorder prediction 724 799 - -
Aed2g1018 1024 Pfam Transcription factor regulating root and shoot growth via Pin3 943 997 IPR013591 -
Aed2g1018 1024 Pfam FYVE zinc finger 423 488 IPR000306 GO:0046872
Aed2g1018 1024 MobiDBLite consensus disorder prediction 724 754 - -
Aed2g1018 1024 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 422 IPR000408 -
Aed2g1018 1024 ProSiteProfiles BRX domain profile. 943 998 IPR013591 -
Aed2g1018 1024 Coils Coil 643 663 - -
Aed2g1018 1024 MobiDBLite consensus disorder prediction 591 615 - -
Aed2g1018 1024 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 427 489 IPR017455 -
Aed2g1018 1024 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 97 149 IPR000408 -
Aed2g1018 1024 MobiDBLite consensus disorder prediction 825 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1018 Aed-Chr2 8054087 8058798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1018 942 997 Major Intrinsic Protein MIP AT1G31880 42.857 5.45e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1018 - - gmx:100798841 1317.37