Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0986 ATGGCTATTTCTCCTGAAACGTTCACAAACCTAAAACGACGACCGTCGGAGGTAAACGACCTTAAGGTGTTGTACTCTTTGCTTCAACTCACGGATCAGATATGTTCCATAAACCTTACAGTTACAGCCACCCTCTTAAACCGCGTCTTCTCTTCCATCGTCCGCAAAACGCAGCTTCTCGGTGTCGTTTTCGAGGAGCTTTTCCGCGTTTCGAATTTGAATCCCGATTCCGTTCTGTTCCTCTGCCTCGAGGAAATGTGCATCGTCCTCCACAAGATCAAAACCCTAATCGAAGATTTCTCCAGTGGAAGAAGCAAGTTCAACCTGCTCATGCAAATCGAAGCAGTGGCGGATAGCTTCCACCGGCTCACCGGAGAGCTCTCCACGCTCCTCGACGTGTTCCCTCTCCAGGAGCTTGACCTAAACGACGACGTGAGGGAGCTTGTTCTCCTCGTCAGAAAGCAGTGCTCCGAAAACAAGGCGTTCATCGGAGTCGAACAGATGAACCTCCGGCACGGCGTCGTTTCCGTCCTCGACCGGATCAAGAACGAGATCGTCCCCGATCAAGCGCATCTCGCTTCGATCTTCGAGAAATTGGAGATTCGCGACGCGTCGAGCTGCAGAGCGGAGATTGAGAGCCTCGAGGAGGAGATTCACAACCGGAGCGGAGAACAAACGAAAACGGATCTCGTCGCGTTGATCGGCCTCGTCCGTTTCGCGAAGTGCGTTCTATACGGCGCGTCAACGCCGTCGCAGAAGACGATCACTCTGCAGCGGAATCAGTCGTCAGAGCTGGCGATTCCGTCGGATTACCGGTGTCCGATAAGCCTAGAACTCATGCGCGATCCCGTGGTGGTGGCGACGGGACAAACATACGATCGTGTATCGATCAAGCTCTGGATCGATTCTGGACACAACACGTGTCCGAAAACGGGTCAAGCATTATCACACAGCGACCTAATCCCGAATCGCGTGCTGCGGAACATGATAGCAGCCTGGTGCCGCGAGCAGAGCATCCCCTTCGAAGCAGAAACGGTTACTGGGAGACTCAACGGCGGAGTTACCAACAAAGCCGCATTAGAAGCCACGCGAATGACGGTGTCGTTTTTGGTCAACAAGCTCAATGGAAATAGAAATGATAACGTTAACGTTCCTTTGAGTGTTGAAGACGCAAACGGCGTCGTTTACGAGCTTCGGGTATTGGCGAAGACGGATTCTGATAGCCGAGCCTGTATAGCCGAAGCTGGAGCGATTCCACTGTTGGTTCGGTTTCTTAGCGTTGGAGCGGAGAATCCGAGCCTGCAGGTTAACGCCGTGACGACGCTTTTGAACTTATCTATATTGGAAGCGAACAAGACTAAGATAATGGAGACAGACGGCGCGTTAAGCGGCGTCGCGGAGGTTTTGATTTCGGGTGCCACGTGGGAGGCGAAGGCGAACGCGGCCGCAACGGTGTTTAGTTTGTCAGGTGTGGCGGCGCACCGGAAGAGAATGGGGAGGAAGACACGTGTCGTGAGCGGGTTGGTGGGTTTGGCTAAGGGTGGACCCGAGGGGGCGCGGAGGGACGCGCTGGCGGCGATATTGAACTTGGCGGCGGATAGGGAGACGGTGGCAAGGCTGGTGGAGGGGGGCGTTGTGGGGATGGCGGCGGAGGTCATGGTGGCGATGCCGGAGGAGGGGGTGACGATTTTGGAGGCGGTGGTTAAGAGGGGTGGGCTGGTGGCGGTGGCGGCGGCGTACGCCGGGATTAAGAGACTAGGGGCGGTGCTGAGGGAGGGATCCGAGAGGGCGAGGGAGAGCGCGGCGGCGACGCTGGTGACCATGTGTCGGAAAGGGGGGTCGGAAGTTGTGGCGGAGCTGGCGGCGGTTCCCGGAGTGGAGAGGATCATTTGGGAGCTCATGGCGGTGGGGAGTGTCAGGGGGCGGCGGAAGGCAGCAACACTATTGAGGATTTTGCGGCGGTGGGCGGCGGGGCTCGACGGTGGAGAGAATGAAGGGTTCACGACGACAACAACAACTACCATGGTTGCTTCCTCAACTACTGTGGTTGTTCCAACGACCACCACTTCCTTAGCACAGTAA 2082 0.5634 MAISPETFTNLKRRPSEVNDLKVLYSLLQLTDQICSINLTVTATLLNRVFSSIVRKTQLLGVVFEELFRVSNLNPDSVLFLCLEEMCIVLHKIKTLIEDFSSGRSKFNLLMQIEAVADSFHRLTGELSTLLDVFPLQELDLNDDVRELVLLVRKQCSENKAFIGVEQMNLRHGVVSVLDRIKNEIVPDQAHLASIFEKLEIRDASSCRAEIESLEEEIHNRSGEQTKTDLVALIGLVRFAKCVLYGASTPSQKTITLQRNQSSELAIPSDYRCPISLELMRDPVVVATGQTYDRVSIKLWIDSGHNTCPKTGQALSHSDLIPNRVLRNMIAAWCREQSIPFEAETVTGRLNGGVTNKAALEATRMTVSFLVNKLNGNRNDNVNVPLSVEDANGVVYELRVLAKTDSDSRACIAEAGAIPLLVRFLSVGAENPSLQVNAVTTLLNLSILEANKTKIMETDGALSGVAEVLISGATWEAKANAAATVFSLSGVAAHRKRMGRKTRVVSGLVGLAKGGPEGARRDALAAILNLAADRETVARLVEGGVVGMAAEVMVAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPGVERIIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGENEGFTTTTTTTMVASSTTVVVPTTTTSLAQ 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0986 693 SUPERFAMILY ARM repeat 387 652 IPR016024 -
Aed2g0986 693 Pfam Armadillo/beta-catenin-like repeat 406 446 IPR000225 GO:0005515
Aed2g0986 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 33 670 - -
Aed2g0986 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 460 IPR000225 GO:0005515
Aed2g0986 693 Pfam U-box domain 267 338 IPR003613 GO:0004842|GO:0016567
Aed2g0986 693 CDD RING-Ubox_PUB 271 313 IPR045210 -
Aed2g0986 693 SMART Ubox_2 270 333 IPR003613 GO:0004842|GO:0016567
Aed2g0986 693 SMART arm_5 492 532 IPR000225 GO:0005515
Aed2g0986 693 SMART arm_5 405 447 IPR000225 GO:0005515
Aed2g0986 693 Gene3D - 355 578 IPR011989 -
Aed2g0986 693 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842|GO:0016567
Aed2g0986 693 PANTHER U BOX DOMAIN-CONTAINING 33 670 - -
Aed2g0986 693 SUPERFAMILY RING/U-box 262 340 - -
Aed2g0986 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 344 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0986 Aed-Chr2 7777405 7779486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0986 15 688 U-box Gene Family AT5G01830 53.869 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0986 - - gmx:100805405 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0986 2 7777405 7779486 Aed2g0986 2 7777405 7779486 ECH