Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0979 ATGATACAAGGGGGAGCATGCGGGTACGGGAACCTGTACCAGCAAGGGTACGGAACCGCCACGACGGCATTGAGCGCCGCCTTATTCAACAACGGGTTCACTTGCGGGGCGTGTTTCCAAATTGTTTGTTCCAATTCACCATTCTGTATCCGTGGCGCCGCCCCAATCATCGTCACCGCCACAAACTTCTGCCCCTCCAACACCTCCTTGTCAGCCACTAACGGCCCCGGTTGGTGCAATCCCCCGTTGATGCATTTTGATATGTCTCAGCCAGCTTTTACCAAGATTGCCATGTACCGTAGTGGAATCGTACCCGTGTTATTTAGAAGGGTTCAGTGTGTGAAGAGAGGAGGCATAAGGTTCACCATGAACGGGAACCCATACTTCAACCTAGTGCTGATAACAAACGTGGGAGGCATAGGAGACGTGAAAGCAGTGTCAATAAAAGGGTCATCAACTGGGTGGCAACGAATGACCAAAAACTGGGGCCAAAATTGGCAGAGCAACACACAGTTCGTTGGACAAAGCCTCTCTTTTATAGTCACAGCCAGCGATGGTCGATCAGTGACTAGTTCCAATGTGATACCTTCTAGCTGGCGATTCGGTCAAACCTTCCAAGGTCATCAATTCTGA 633 0.5055 MIQGGACGYGNLYQQGYGTATTALSAALFNNGFTCGACFQIVCSNSPFCIRGAAPIIVTATNFCPSNTSLSATNGPGWCNPPLMHFDMSQPAFTKIAMYRSGIVPVLFRRVQCVKRGGIRFTMNGNPYFNLVLITNVGGIGDVKAVSIKGSSTGWQRMTKNWGQNWQSNTQFVGQSLSFIVTASDGRSVTSSNVIPSSWRFGQTFQGHQF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0979 210 PRINTS Expansin/Lol pI family signature 3 21 IPR007118 GO:0005576
Aed2g0979 210 PRINTS Expansin/Lol pI family signature 25 43 IPR007118 GO:0005576
Aed2g0979 210 PRINTS Expansin/Lol pI family signature 155 169 IPR007118 GO:0005576
Aed2g0979 210 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Aed2g0979 210 PRINTS Expansin/Lol pI family signature 101 117 IPR007118 GO:0005576
Aed2g0979 210 SUPERFAMILY Barwin-like endoglucanases 3 136 IPR036908 -
Aed2g0979 210 Gene3D - 1 113 IPR036908 -
Aed2g0979 210 PANTHER EXPANSIN-A15 3 210 IPR002963 GO:0009664
Aed2g0979 210 SMART dpbb_1 21 108 IPR007112 -
Aed2g0979 210 Pfam Lytic transglycolase 21 107 IPR009009 -
Aed2g0979 210 PANTHER EXPANSIN 3 210 - -
Aed2g0979 210 SUPERFAMILY PHL pollen allergen 115 207 IPR036749 -
Aed2g0979 210 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 4 118 IPR007112 -
Aed2g0979 210 PRINTS Expansin signature 93 106 IPR002963 GO:0009664
Aed2g0979 210 PRINTS Expansin signature 76 93 IPR002963 GO:0009664
Aed2g0979 210 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Aed2g0979 210 PRINTS Expansin signature 117 129 IPR002963 GO:0009664
Aed2g0979 210 PRINTS Expansin signature 16 30 IPR002963 GO:0009664
Aed2g0979 210 PRINTS Expansin signature 193 209 IPR002963 GO:0009664
Aed2g0979 210 PRINTS Expansin signature 129 150 IPR002963 GO:0009664
Aed2g0979 210 Pfam Expansin C-terminal domain 119 196 IPR007117 -
Aed2g0979 210 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 128 207 IPR007117 -
Aed2g0979 210 Gene3D - 118 210 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0979 Aed-Chr2 7708965 7710754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0979 4 210 Expansin Gene Family AT2G03090 67.308 1.12e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0979 - K20628 gmx:100797425 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0979 2 7708965 7710754 Aed2g0979 2 7708965 7710754 ECH