Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0959 ATGAGCCAACGTGTCCCTAACTGCGATGTGGACGACAATAACATTCCCACAGCCCCAAAAATCCCTCTTCTTCCCAGTTTCAATTTCATATCCCATGAAGTTCCAATGAAGAGTAGAATATTCATGAAATTTGATACTTACAGGTTGGGTTACATAGTCGAGAAACCACCATGCAGAAAGGGACAACCTTCGACGCACGAAGGCATCGCCACCACTGCCGAAAACCTAACAACATGGAACAAACCTCGTGCAAGCAGTGGTGGTGGTACCTTGGAGTCCATAGTTAATCAACCTATCAGCGAAAATCACTACAGGTTGGTTACTATGGACGCCTTAGTGCCCTGTTGCAAACAGGGCACACGGAGGGTAGTGGAGTCGGGAAAACTTGGCGCGTCATGTGGTGCTGGGGTTGCGGTGCGCGAGAAAGTGGGGAAACGCGCTGGCATGGTGGCGCGTGGGGTTAAAACTCAAGAGTTGGGTGGCTGCAAGGATTGGAGTGTGAGTGGTAGTGAAACTTGTCAGAGGGATTCGAGTGTGGCTTTCAATTCTTCCACCATGTGTTCGCCGGAAAACACCACTAGCTCCGGCAAACAGTGTACCGGAACCACCACCGCCAACAACGACGACCGCGATTCCATTAGCCTCCGTATATCGCAGAGTGAGGTACCGGATGAGGATTACAAGGCAACAAAAGTTGATCATAGATCTTCTGGGTCCAACAAAAGAATAAAACCTAATTCTTCAGTTGTGCACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGTTGGTCCCAAATTCCAGTAAGACAGATAAAGCTTCGATGCTGGATGAGGTGATCCAATATATGAAGCAATTGCAAGGGCAAGTGCAAATGATGAATTGGATGAAAATGTACAGCTCCATGAATATGAATATGATGATGCCAATTACCATGCAACAACAACAACAACAACAACTTAAAATGTCTATGATGATGGCTCAGACGATGGGCATGGGAATGGGAATGAATATTAAGGATATGGTTATGAATATGAACAGTAGCATGAACAATATTCCTCCTATGCTCCCCTTTCCTCCCTTCATGCCTATGCCGTCATGTGGTGATCCATTACAAGTTGCACCAGAGAAGTCTGTGACCATGGATGCATACAGTAAGATGGCTGCCCTGTATCAACAGATGTTTCATCCTCCAGCTTCTACTAATTCCAAGAACTGA 1245 0.4578 MSQRVPNCDVDDNNIPTAPKIPLLPSFNFISHEVPMKSRIFMKFDTYRLGYIVEKPPCRKGQPSTHEGIATTAENLTTWNKPRASSGGGTLESIVNQPISENHYRLVTMDALVPCCKQGTRRVVESGKLGASCGAGVAVREKVGKRAGMVARGVKTQELGGCKDWSVSGSETCQRDSSVAFNSSTMCSPENTTSSGKQCTGTTTANNDDRDSISLRISQSEVPDEDYKATKVDHRSSGSNKRIKPNSSVVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQGQVQMMNWMKMYSSMNMNMMMPITMQQQQQQQLKMSMMMAQTMGMGMGMNIKDMVMNMNSSMNNIPPMLPFPPFMPMPSCGDPLQVAPEKSVTMDAYSKMAALYQQMFHPPASTNSKN 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0959 414 Coils Coil 252 272 - -
Aed2g0959 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 315 IPR036638 GO:0046983
Aed2g0959 414 SMART finulus 252 301 IPR011598 GO:0046983
Aed2g0959 414 MobiDBLite consensus disorder prediction 181 261 - -
Aed2g0959 414 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 53 411 - -
Aed2g0959 414 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 53 411 IPR031066 -
Aed2g0959 414 MobiDBLite consensus disorder prediction 181 219 - -
Aed2g0959 414 Pfam Helix-loop-helix DNA-binding domain 250 296 IPR011598 GO:0046983
Aed2g0959 414 CDD bHLH_AtPIF_like 247 302 - -
Aed2g0959 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 295 IPR011598 GO:0046983
Aed2g0959 414 Gene3D - 244 307 IPR036638 GO:0046983
Aed2g0959 414 MobiDBLite consensus disorder prediction 221 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0959 Aed-Chr2 7562142 7566146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0959 1 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 36.747 5.79e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g0959 HLH 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0959 - - gmx:100820284 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1509 9 18112890 18119249 Aed2g0959 2 7562142 7566146 PCT