Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0955 ATGCAAGTTCTTCGTTACATGTCTTTTGTTGTAGTATTTTATTCTCTGTTACTACTAAACACTTGCCATTGTCTGAATCTCAAATTATTTAATGCTTCCAAAATTCAAAACGAGGATCAATGGCGAGGAGCAGCGGCTACATGGTTCGGACCACCAAAGGGTGGTGGGTCCGATGGGGGTGCTTGTGGATATGGTGGCAGTGTTGAGAAACCGCCGCTATCTAAAATGGTATCAGCTGGTGGTCCTTCTCTTTTCCGTGGCGGCAGAGGGTTGAAAGATCATGTAAAATGCACAGAAAATGCCTTATGTTCAGGAAAACCAGTGAGAGTGATGATAAGTGATGAATGCCCAGGTTGTAACTTACAATCAGTCCATTTTGATCTCAGTGGCACAGCCTTTGGCTCCATTGCAATTCAAGGCCAGGCACAAAATCTTCGAAATGCTGGAGAGCTTAATATTCTTTACAGAAGGGTTGCATGCTCCTTTGGGAACTCCATAGCCTTCACCATCGACAATGGGGCCAACCCATACTATTTTGCTACCGAAATAGAATACCAAAATGGCGATGGTGACCTTGTGGCCATTGAGTTGAAGCAAGCTAATTCTGACACGTGGCTTCCAATGCAGCGTTCATGGGGTGCAAGGTGGGCTTTGAACTTAGGTTTACAATTGCAACCACCATTTTCTATCAAGCTCACAGAACAAGGCAATGGAAATTCCAAAACCATTGTGGCTGATAGTGTAATTCCGCATGATTGGAAACCTAATCATGTTTATCGATCTGAAGTTAATTTTTAA 798 0.4323 MQVLRYMSFVVVFYSLLLLNTCHCLNLKLFNASKIQNEDQWRGAAATWFGPPKGGGSDGGACGYGGSVEKPPLSKMVSAGGPSLFRGGRGLKDHVKCTENALCSGKPVRVMISDECPGCNLQSVHFDLSGTAFGSIAIQGQAQNLRNAGELNILYRRVACSFGNSIAFTIDNGANPYYFATEIEYQNGDGDLVAIELKQANSDTWLPMQRSWGARWALNLGLQLQPPFSIKLTEQGNGNSKTIVADSVIPHDWKPNHVYRSEVNF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0955 265 Pfam Lytic transglycolase 95 154 IPR009009 -
Aed2g0955 265 PANTHER EXPANSIN-B3 1 265 - -
Aed2g0955 265 SUPERFAMILY PHL pollen allergen 165 261 IPR036749 -
Aed2g0955 265 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Aed2g0955 265 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Aed2g0955 265 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Aed2g0955 265 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Aed2g0955 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Aed2g0955 265 PANTHER EXPANSIN-LIKE PROTEIN B1 1 265 - -
Aed2g0955 265 Gene3D - 27 161 IPR036908 -
Aed2g0955 265 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Aed2g0955 265 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Aed2g0955 265 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Aed2g0955 265 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Aed2g0955 265 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Aed2g0955 265 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Aed2g0955 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 165 IPR007112 -
Aed2g0955 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 261 IPR007117 -
Aed2g0955 265 Pfam Expansin C-terminal domain 166 250 IPR007117 -
Aed2g0955 265 Gene3D - 162 265 IPR036749 -
Aed2g0955 265 SUPERFAMILY Barwin-like endoglucanases 38 162 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0955 Aed-Chr2 7498417 7500516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0955 20 265 Expansin Gene Family AT1G65680 52.988 5.56e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0955 - - gmx:100786475 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0955 2 7498417 7500516 Aed2g0955 2 7498417 7500516 ECH
Aed9g1507 9 18042464 18045922 Aed2g0955 2 7498417 7500516 PCT