Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0954 ATGGCGTTGGTTTTGGATCAACAACAATCCAACTTCAAGCACTTTTGTAAAATTTGCAAGAAAGGCTTTGGGTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGGGATGAAAGTGGTCACATGGATGATGATGACCAAGCAAGTGATTGGGAAGATAGGATGGGTGGTGGGAATGTGCCACCAAGCAACAAACGAATGTATGCCCTAAGAACAAACCCTAACAGGCTAAAGAGCTGTAGGGTTTGTGAGAATTGTGGCAAGGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACATCTGAGGATGCTGAGTCCTTGGTCTCCTCTCCTGGATCCGACGGCGACAATGGTATCAGCGGCGCCGGCAGCAGGAGAGGATGTGGTTGGTCCAAAAGGAAAAGGTCAATGAGAACTAAAGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGAGCTTGCAAATTGTTTAATGATGTTATCCAATGCCATTGTAGATCCTCTTGTAGCCGAGCCTGAAGAATCTTGTGCATCGGCTAGCAAAGAGGAGGAACATAGAAGAAACCCAATGAACTTCATTGCACCATTATCACACAAAGTTCATAACGCTAACAAAAACAACCTTATTGATAACAAGGCCAAAGGGGTTGCCAAGCTCGTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTCAAAGGTTGTTTTGCTGCAAGACTAGACGACAACAACAACATTGACGACAACAACCTCATGATGATGGAGGATGATGACATCACTACAACACATGAAGAGTTCTTCCCTACAAAATCAAACTCAACCAACCTCCAATTTGACCATGGAATCACAAGCTCCAATAACAACCCCACATTGGCCTCTTCCTCAAAGAGGAAATCCAAAGTGCACGAATGCTCCATTTGCCATAGGTGCTTCTCTTCAGGACAAGCCTTGGGGGGACACAAAAGGTGCCATTGGATCACATCAAATGCTCCTGACACATCCAAACTAACAAGGTTTCAGCAATTCCAAGACCACCACGTGGATCATCAAATACCAAAATTTGACACCTCTAATTCTGAGCCTCTTGATCTCAAATTGGACCTCAACCTTCCTGCACCTTCCCTTAATGACCATGCAAGAAGGAACAACAATAATGACATTAACACTGGTGGAACCTCTTCGTCATGGTTGCAGGTGGGAATAGGTTCAACAACTACAACTACAACTACCACTACTGATATGGCTGCTGATAACTGCTGA 1329 0.4454 MALVLDQQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRMGGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDGDNGISGAGSRRGCGWSKRKRSMRTKVGSFNYNCPSSEEEELANCLMMLSNAIVDPLVAEPEESCASASKEEEHRRNPMNFIAPLSHKVHNANKNNLIDNKAKGVAKLVFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDDNNNIDDNNLMMMEDDDITTTHEEFFPTKSNSTNLQFDHGITSSNNNPTLASSSKRKSKVHECSICHRCFSSGQALGGHKRCHWITSNAPDTSKLTRFQQFQDHHVDHQIPKFDTSNSEPLDLKLDLNLPAPSLNDHARRNNNNDINTGGTSSSWLQVGIGSTTTTTTTTTDMAADNC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0954 442 MobiDBLite consensus disorder prediction 110 137 - -
Aed2g0954 442 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Aed2g0954 442 ProSitePatterns Zinc finger C2H2 type domain signature. 327 347 IPR013087 -
Aed2g0954 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 325 347 IPR013087 -
Aed2g0954 442 Gene3D Classic Zinc Finger 11 105 - -
Aed2g0954 442 SUPERFAMILY beta-beta-alpha zinc fingers 229 347 IPR036236 -
Aed2g0954 442 PANTHER OS02G0659100 PROTEIN 1 402 - -
Aed2g0954 442 MobiDBLite consensus disorder prediction 397 417 - -
Aed2g0954 442 Pfam C2H2-type zinc finger 14 36 - -
Aed2g0954 442 Pfam C2H2-type zinc finger 229 254 - -
Aed2g0954 442 Pfam C2H2-type zinc finger 324 349 - -
Aed2g0954 442 MobiDBLite consensus disorder prediction 399 417 - -
Aed2g0954 442 SUPERFAMILY beta-beta-alpha zinc fingers 14 103 IPR036236 -
Aed2g0954 442 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Aed2g0954 442 SMART c2h2final6 230 252 IPR013087 -
Aed2g0954 442 SMART c2h2final6 325 347 IPR013087 -
Aed2g0954 442 SMART c2h2final6 14 36 IPR013087 -
Aed2g0954 442 PANTHER OS02G0659100 PROTEIN 1 402 - -
Aed2g0954 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0954 Aed-Chr2 7488549 7490129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0954 138 425 C2H2 Transcription Factor Family AT1G02040 35.235 1.69e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g0954 zf-C2H2_6 2.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0954 - - gmx:100793846 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0954 2 7488549 7490129 Aed2g0954 2 7488549 7490129 ECH