Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0953 ATGGAGAAGCACAAGTGCAAGCTTTGTTTGAGGAGTTTCGCGAATGGAAGAGCGTTGGGAGGACACATGAGGTCTCACATGATGAACCTACCCGTTCCTCCGAAACAGCAGAGCGAGTTTGTGCCGATTCAACTCAGCTTCGAGGCCGAGTCGTCCCCTTCGCAATCCTCATCTTCCTTCTACGGCCTCAGAGAGAATCCGAAGAAGAGCTTCCGTTTCGCAGATCCTGAATTCTCGTCCGCCGCAGCCTCCGTGATCCTGCAGGACAGGGAGAGCGAGACCGAGTCGTCAAGGAATCCGACTCGGAGACGATCCAAGAGAGCGTGGCAACTCGGAGACTCGGGCCAGAACGAGAAAAAAATAAAATTAGTTTATGAATCTGCTAGCTCCGCCTCGGACACCACGGAGGAAGACGTGGCATTCTGCCTCATGATGCTTTCTCGCGACAAGTGGAAGATAAATAAACAAAACAGAGTCACAGAAACAGAGCAACAATCCAAGTTATACATAGAAGAAGACAAAGACGAGGAAGATGAAGAAGACGATTATGATAACGAAGATGATGACGACGACGATGACGGCGGTTACGAGTCCAAAGAAGAAGAACTTAAATCTGTGATCAAGAAGAGTAACAACAAGGTGCGAGGGAGATATAAATGCGAGACGTGTGAGAAGGTGTTTCGATCTTACCAGGCTCTCGGTGGCCATCGCGCGAGTCACAAGAAGCTCAAGATAAACTGCCAAACCGAAACCACCACCGAACTCGAAGTGGTTGAGCAACGCGTTGTGGTCGCGGAGAAGAAGATTCACGAATGCCCTGTTTGTTTCAGAGTATTTGCTTCGGGTCAGGCTCTGGGTGGACACAAGAGAACACACGTGATTGGTTCCGCCACAACAACCGCAACGGTTAGAACAGCAACAGCTTCTGCTGCAACTGTTTCTGTTAGAACTTCTACTACTACTAGAGTTGGAGATAGTTTGATAGATCTCAATCTCCCTGCTCCAATGGACGATGACAAAGACGACGAGGATGTTAGCCAGTTTGATGACTCTGCTGTTTCGGATGCAGAGTTTGTTAAACTGTGA 1086 0.488 MEKHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKQQSEFVPIQLSFEAESSPSQSSSSFYGLRENPKKSFRFADPEFSSAAASVILQDRESETESSRNPTRRRSKRAWQLGDSGQNEKKIKLVYESASSASDTTEEDVAFCLMMLSRDKWKINKQNRVTETEQQSKLYIEEDKDEEDEEDDYDNEDDDDDDDGGYESKEEELKSVIKKSNNKVRGRYKCETCEKVFRSYQALGGHRASHKKLKINCQTETTTELEVVEQRVVVAEKKIHECPVCFRVFASGQALGGHKRTHVIGSATTTATVRTATASAATVSVRTSTTTRVGDSLIDLNLPAPMDDDKDDEDVSQFDDSAVSDAEFVKL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0953 361 Gene3D Classic Zinc Finger 215 292 - -
Aed2g0953 361 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Aed2g0953 361 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 361 - -
Aed2g0953 361 SMART c2h2final6 4 26 IPR013087 -
Aed2g0953 361 SMART c2h2final6 218 240 IPR013087 -
Aed2g0953 361 SMART c2h2final6 270 292 IPR013087 -
Aed2g0953 361 MobiDBLite consensus disorder prediction 91 109 - -
Aed2g0953 361 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 361 IPR044303 GO:0006355
Aed2g0953 361 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Aed2g0953 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Aed2g0953 361 MobiDBLite consensus disorder prediction 87 113 - -
Aed2g0953 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 292 IPR013087 -
Aed2g0953 361 MobiDBLite consensus disorder prediction 162 205 - -
Aed2g0953 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Aed2g0953 361 Pfam C2H2-type zinc finger 217 242 - -
Aed2g0953 361 Pfam C2H2-type zinc finger 4 27 - -
Aed2g0953 361 Pfam C2H2-type zinc finger 270 292 - -
Aed2g0953 361 MobiDBLite consensus disorder prediction 172 197 - -
Aed2g0953 361 SUPERFAMILY beta-beta-alpha zinc fingers 217 292 IPR036236 -
Aed2g0953 361 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0953 Aed-Chr2 7481400 7482485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0953 1 339 C2H2 Transcription Factor Family AT3G60580 44.350 1.31e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g0953 zf-C2H2_6 4.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0953 - - gmx:100776462 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0953 2 7481400 7482485 Aed2g0953 2 7481400 7482485 ECH
Aed9g1502 9 17977303 17978574 Aed2g0953 2 7481400 7482485 PCT