Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0881 ATGGAAGATTCTGATCAGCCAGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTTTTCAGAAAACCAGTTAATAAAAGGAATATAAGGAAACGAACTATTGATAATGAAGATAATGAGGAGGACTCAAACAAAGAAACTTCTCTGTTGCATATTCAGAAGAAGACCTTAAAGTCTGACAATAAGTTGTACTTTTCCACTGGCCCTTCAAAAAGCTCTGCATCTTCTGAACCAAGTGAAGAATTGGGAAAATCCGTCTTTCAGTTTGAGTCTTCTAAAGAAATTCAAGTTCAACATGATAACAAAGCAACAGCAACTCTAGAGACCGAGACTGACTTTTCAAAAGATGCTCGTGCCATCCGCGAAAGAGCTCTTAAGCAAGCAGAGGAGAGTCTGAAAGGGAAAAGTGCAAGCTCTGAGAATGAAAAATTATATAAGGGAATTAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGTCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAACCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAAAAGAGGATGTGGATGAGGAGGAGGGTACTAATTTGACTGATGAAGATGATGATTCGTTACCATTTGCCTGTTTCATTTGCAGAAACCCTTTTGTGGATCCTGTAGAAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAACAAGAAGTGTTTTGTCTGCAATCAGCCAACGCTTGGCATTTTCAATGTTGCTCATGAGATACGCAGGAAGATGGCTGAGGATAAAGATAAATCATAA 996 0.4016 MEDSDQPAKSAENQQTEQVCSFFRKPVNKRNIRKRTIDNEDNEEDSNKETSLLHIQKKTLKSDNKLYFSTGPSKSSASSEPSEELGKSVFQFESSKEIQVQHDNKATATLETETDFSKDARAIRERALKQAEESLKGKSASSENEKLYKGINSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARKMRLAAKEDVDEEEGTNLTDEDDDSLPFACFICRNPFVDPVETKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKDKS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0881 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Aed2g0881 331 SUPERFAMILY RING/U-box 268 311 - -
Aed2g0881 331 SMART ring_2 269 306 IPR001841 -
Aed2g0881 331 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Aed2g0881 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Aed2g0881 331 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Aed2g0881 331 CDD RING-HC_RNF113A_B 267 307 - -
Aed2g0881 331 MobiDBLite consensus disorder prediction 32 61 - -
Aed2g0881 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 328 - -
Aed2g0881 331 MobiDBLite consensus disorder prediction 62 87 - -
Aed2g0881 331 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Aed2g0881 331 MobiDBLite consensus disorder prediction 1 87 - -
Aed2g0881 331 MobiDBLite consensus disorder prediction 8 22 - -
Aed2g0881 331 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Aed2g0881 331 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Aed2g0881 331 Gene3D - 190 224 - -
Aed2g0881 331 PANTHER ZINC FINGER PROTEIN 183 10 328 IPR039971 -
Aed2g0881 331 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0881 Aed-Chr2 6777327 6781710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0881 7 331 C2H2 Transcription Factor Family AT1G01350 68.615 3.40e-168 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed2g0881 zf-C3HC4_3 9.5e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0881 K13127 - gmx:100817146 608.601