Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0816 ATGGGTAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAACTCTCTGTTCTCTGTGAAGCTGAGGTTGCCCTCATCATTTTCTCAAGCCGTGGCAAGCTCTATGAATTTGGAAATGTTGGCACTACCAAAACTATTGAGCGATACCAGCGTTGCTCTTTTACTCCTCAAGATGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAACATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGGGCTTTAGCACAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAACGCCAACTTGGAGACATGAATAAGCAACTTAGACTCAAGCTTGAAGCAGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTGGAACTCTACTTCAGCTGCTGGAAATAGTGGTTTTCCCTTTCAGCCTGCTCAGACCAATAATCCTATGGATTACCAGCAGCAGGCAGAACCCTTTTTGCAAATAGGGTACCATCAATATGTTCAAGCCGAGGCTTCTAATGTTCCAAAGAGCATGACTTCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 744 0.4382 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCEAEVALIIFSSRGKLYEFGNVGTTKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERQLGDMNKQLRLKLEAEGFNLKAMESLWNSTSAAGNSGFPFQPAQTNNPMDYQQQAEPFLQIGYHQYVQAEASNVPKSMTSCETNFMQGWIL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0816 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed2g0816 247 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Aed2g0816 247 Coils Coil 119 142 - -
Aed2g0816 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 232 - -
Aed2g0816 247 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Aed2g0816 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed2g0816 247 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed2g0816 247 Coils Coil 148 168 - -
Aed2g0816 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed2g0816 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed2g0816 247 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Aed2g0816 247 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed2g0816 247 PANTHER MADS BOX PROTEIN 1 232 - -
Aed2g0816 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed2g0816 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed2g0816 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0816 Aed-Chr2 6271699 6277748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0816 1 247 MADS-box Gene Family AT2G45650 63.529 1.39e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed2g0816 K-box 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0816 K09264 - gmx:100820061 429.869