LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g0815	ATGACTCAATTATGTAGCATTAGCATACCCTTCTTCTCTTTCTTCTATTTCTGTGTTTATGCTATCTCTCTCTCTCATTTTCTCTGTTTCCCTTCCTTTCCTAGGCTCAAGCCTTTTATTATTCCTAGCTCCCTTCCTTGGCTCAATAGATTTTCCCTTGGTTTTGCCAATTTGGTAACTGAACTTTTTCCTTTAGTTTACTGTGAGAGAACTGCTTCTGCATTTGAACTAGATGCTTTTCTTACTGGCTCAGATTTGCTGCAAATCTCTCCATTTCCCCATCATCAGAAGAAAGAAGAAGTGAAAGAAAGAATATTAGAGAAAATGGTGAGGGGAAAGACACAGATGAGGCGTATAGAGAACGCCACAAGCAGGCAAGTAACTTTCTCAAAGAGAAGAAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGGAGGCTCTATGAATTTGCTAGCTCCAACATGCAGGGGTCAATTGAACGATACCGCAGACATACCAAGCATGATAATCCAACACCACTCAGATCAGTTGAACAAAATATGCAGCATTTGAAGCAAGAGGCAGCAAACATGCTGAATAAGATTGACCTTCTTGAAGCTGCAAAACGGAAGTTCTTGGGAGAAGGTTTGGGACCTTGCTCCATTGAGGAACTGCAACGGATAGAACAACAGTTGGAGAAGAGTTTAAGTATTGTTAGAGCAAGAAAGGTCCAGGTTTACCAGGAACAAATCGAGGAACTAAAAGAAAAGCATGGCATCCATGATCCACAGCCAGCAACAAACAAAAATCAGAATGTGAATGAACAACCCCAATACAATGAAGAAAGTAGTCCAAGTTTAGATGTGGAAACCGAATTGTTCATTGGAATTCGACCTGATACAAGAACAAGACGCATCTCTCATCAGGTCTAG	957	0.4107	MTQLCSISIPFFSFFYFCVYAISLSHFLCFPSFPRLKPFIIPSSLPWLNRFSLGFANLVTELFPLVYCERTASAFELDAFLTGSDLLQISPFPHHQKKEEVKERILEKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLYEFASSNMQGSIERYRRHTKHDNPTPLRSVEQNMQHLKQEAANMLNKIDLLEAAKRKFLGEGLGPCSIEELQRIEQQLEKSLSIVRARKVQVYQEQIEELKEKHGIHDPQPATNKNQNVNEQPQYNEESSPSLDVETELFIGIRPDTRTRRISHQV	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g0815	318	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	118	165	IPR002100	GO:0003677\|GO:0046983
	Aed2g0815	318	PANTHER	MADS BOX PROTEIN	109	307	-	-
	Aed2g0815	318	Coils	Coil	230	250	-	-
	Aed2g0815	318	MobiDBLite	consensus disorder prediction	272	295	-	-
	Aed2g0815	318	SUPERFAMILY	SRF-like	111	195	IPR036879	GO:0003677\|GO:0046983
	Aed2g0815	318	PRINTS	MADS domain signature	131	146	IPR002100	GO:0003677\|GO:0046983
	Aed2g0815	318	PRINTS	MADS domain signature	111	131	IPR002100	GO:0003677\|GO:0046983
	Aed2g0815	318	PRINTS	MADS domain signature	146	167	IPR002100	GO:0003677\|GO:0046983
	Aed2g0815	318	Gene3D	-	121	204	IPR036879	GO:0003677\|GO:0046983
	Aed2g0815	318	Coils	Coil	189	216	-	-
	Aed2g0815	318	ProSiteProfiles	K-box domain profile.	196	287	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aed2g0815	318	ProSitePatterns	MADS-box domain signature.	111	165	IPR002100	GO:0003677\|GO:0046983
	Aed2g0815	318	Pfam	K-box region	193	267	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aed2g0815	318	CDD	MADS_MEF2_like	111	182	IPR033896	GO:0000977\|GO:0045944
	Aed2g0815	318	ProSiteProfiles	MADS-box domain profile.	109	169	IPR002100	GO:0003677\|GO:0046983
	Aed2g0815	318	SMART	madsneu2	109	168	IPR002100	GO:0003677\|GO:0046983
	Aed2g0815	318	PANTHER	MADS-BOX PROTEIN SOC1	109	307	-	-
	Aed2g0815	318	MobiDBLite	consensus disorder prediction	264	295	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g0815	Aed-Chr2	6249315	6269746	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g0815	109	265	MADS-box Gene Family	AT2G45660	77.070	2.67e-82	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aed2g0815		K-box	1.5e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g0815	-		-	gmx:100807963	314.694

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed3g0788	3	5566120	5576667	Aed2g0815	2	6249315	6269746	PCT