Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0752 ATGAAGCCTGTTTTCTGCGGAAATCTGGATTTCGACGCGCGTCAATCCGATGTGGAAAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTCGACATGAAATCCGGTTTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGGTGATTCCAAAAAATCTTCATCTAATTCAAAACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCTGTTCACGCCAGGACAAGGGATCTGGAGAGACATTTTGACTCCTATGGGAAAATATTGAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGGTTCAAGTTTATGGACCGTGTGATCACAGTGGAGTATGCCATAAGAGATGATGATGACAGAGAGAAAAGGAATGGATACAGTCCTGATAGAAGAGGAGGTCATGACTCTCCTGATGGGGGGAGATATGGTGGTGGTCGTGGTAGATCCCCTAGTCCTTATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGAGCAAATCCATCTTCCAGAACAGAAGCAAGAGGAAGCCCCAAGTATGAACGAGCAGAAAGCCCGATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCAGAGATAGGTCACGATCTTGA 777 0.4505 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGGDSKKSSSNSKPSKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLRFKFMDRVITVEYAIRDDDDREKRNGYSPDRRGGHDSPDGGRYGGGRGRSPSPYRRGRGSPDYGHGANPSSRTEARGSPKYERAESPINGRYDSRSPPPRDRSRS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0752 258 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 219 - -
Aed2g0752 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Aed2g0752 258 SUPERFAMILY RNA-binding domain, RBD 4 173 IPR035979 GO:0003676
Aed2g0752 258 MobiDBLite consensus disorder prediction 71 95 - -
Aed2g0752 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Aed2g0752 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 162 IPR000504 GO:0003723
Aed2g0752 258 PANTHER - 4 219 - -
Aed2g0752 258 Gene3D - 86 236 IPR012677 -
Aed2g0752 258 MobiDBLite consensus disorder prediction 173 191 - -
Aed2g0752 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 169 IPR000504 GO:0003723
Aed2g0752 258 MobiDBLite consensus disorder prediction 229 258 - -
Aed2g0752 258 SMART rrm1_1 98 165 IPR000504 GO:0003723
Aed2g0752 258 SMART rrm1_1 3 70 IPR000504 GO:0003723
Aed2g0752 258 Gene3D - 1 85 IPR012677 -
Aed2g0752 258 MobiDBLite consensus disorder prediction 173 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0752 Aed-Chr2 5501897 5505341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0752 4 152 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 1.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0752 K12893 - gmx:100797778 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0752 2 5501897 5505341 Aed2g0752 2 5501897 5505341 ECH