Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0725 ATGTCATCTTTTGTTGCTCTTCATGGCCTGCATGGCTCTCTTAACCGATCCCAGTTCCTAGGCCAAGACAGCCTCACGCATCTCTACCCTCGCAACAACAAGGCTTCAACCATTCACAACAAGCCAATAGCAGCACAACCATGTGCCAAATTCGACATGCTGCAAATCCTTGGAGGAAGAGGACTATGCAATGGAGAAGCAGGCCTTACACAAGAGCTGAAGAAGCAAGTTGGTGTTGATGAGAAAGCACCACCATCAGAAACTAGTGACAAAGAGCAAGAGGAGGACTCAACAAAGGCCTTGGCAAGTGTTGTTGCTGCTGAAGATGGTTTTGAGAAGGAACTGATGGGGTTAACTGGGGGGTTTCCAGGGGGTGAGAAAGGTTTGAAAATGTTCATTAAGGAAAACCCTCCTCCAAAACCAAGTCAAGGGAGCAAAAGCTTGAAACTTGCACTGTCTAAGAAGCCAAAGCCACCAGAACTGCCTCTGCTGCTGCCAGGGATGATTGCCATTGTGAAGAACCCGAATAACCCGTTTTACATGTACTGTGGAATTGTGCAAAGAATCACTGATGGGAAGGCCGGGGTTCTCTTTGAAGGAGGCAACTGGGACAGGTTGATCACGTTTAGGTTGGAAGAACTTGAGCGCCGAGAAAAAGGCCCTCCCATGAAGAATCCCAGGGTTCGTTTTCTCTTTCCCGTTCTCGTCTTCTCAAGCTTCATACTTCCCTGCCTCTGCTCTTCAGAATCCTCGTTTCCTTTTAACGGCGCCGCCGCACCGCACCGCACCGGCGTGCGAGACAGCGGAGTCCTGGTTCCTTCTCCTCCGTTGCTTCCCTGTTCTCCTTTGAAGGTTTGGTTTGCTTCCATTCTTCACTGCAAGCTCAGAAGCACCGTGCCAGGTTGGAAACTAAGAATGGAGGAAGAGAATGAAGAAATCAAAACATTTAAGGATTTGGGCTTATCCGAGTCATTGGTGGAAGCTTGCGATAAATTGGGTTGGAAAAATCCATCGAAGATACAGACAGAAGCGATTCCTCTTGCATTGCAAGGAAAAGATGTGATAGGACTTTCCCAAACTGGTTCGGGTAAGACTGGAGCTTTTGCTCTTCCCATATTGCATGCCCTCTTAGAAGCACCACACCCAAAAGATTTCTTTGCTTGTGTACTGTCTCCCACAAGAGAACTTGCTATTCAAATTGGGGAGCAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTACTTGTTGGAGGAATTGACATGGTACAACAAACCATCAAGATAGCAAAGCAACCTCATATTATTGTCTTAGATGAAGCGGATAGGATGTTGAATGATGACTTTGAGGAACCACTTAATGAGATTTTACAAATGATTCCTCGTGAGCGGAGGACATTTCTGTTTTCTGCTACGATGACTAAGAAGGTTCAGAAGCTCGAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCATCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGTTTTTTGCCTGCCAAACACAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGCCGGAAGTAAATCAATGGTGTTCACTCGCACTTGTGATGCAACTCGGCTTCTAGCATTGATCCTCAGGAATCTTGGTTTAAAAGCCATCCCAATTAATGGTCATATGAGTCAGTCAAAGAGACTTGGAGCATTGAATAAGTTCAAATCTGGGGAATGCACTATTCTCCTTTGTACCGAGGTAGCAAGTAGAGGGCTGGATATTCCAACAGTAGATATGGACTATATACATCGCGTGGGAAGGACTGCTCGTATAGGGCGCTCTGGGGTTGCCATTTCACTTGTAAATCAGTATGAGCTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCCTGCCCAAGAAGAGGAAGTTCTGCTTTTGGAAGAGCGCGTTAGTGAGGCCAAAAGATTAGCCGTCATGAAAATGAAGGAGACTGGAGGGAAGAAGAAAAGGAGGGGCGAAGAAGATTACGATGGGGATGATGTAGACAAGTACTTGGGTCTCAAGGATGGGAAATCATCCAAAAAGTTTAGAAGAAGATGA 2127 0.456 MSSFVALHGLHGSLNRSQFLGQDSLTHLYPRNNKASTIHNKPIAAQPCAKFDMLQILGGRGLCNGEAGLTQELKKQVGVDEKAPPSETSDKEQEEDSTKALASVVAAEDGFEKELMGLTGGFPGGEKGLKMFIKENPPPKPSQGSKSLKLALSKKPKPPELPLLLPGMIAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRVRFLFPVLVFSSFILPCLCSSESSFPFNGAAAPHRTGVRDSGVLVPSPPLLPCSPLKVWFASILHCKLRSTVPGWKLRMEEENEEIKTFKDLGLSESLVEACDKLGWKNPSKIQTEAIPLALQGKDVIGLSQTGSGKTGAFALPILHALLEAPHPKDFFACVLSPTRELAIQIGEQFEALGSEIGVKCAVLVGGIDMVQQTIKIAKQPHIIVLDEADRMLNDDFEEPLNEILQMIPRERRTFLFSATMTKKVQKLERVCLRNPVKIEASSKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSKSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECTILLCTEVASRGLDIPTVDMDYIHRVGRTARIGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAVMKMKETGGKKKRRGEEDYDGDDVDKYLGLKDGKSSKKFRRR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0725 708 MobiDBLite consensus disorder prediction 670 700 - -
Aed2g0725 708 CDD SF2_C_DEAD 505 623 - -
Aed2g0725 708 MobiDBLite consensus disorder prediction 75 98 - -
Aed2g0725 708 Gene3D - 159 228 - -
Aed2g0725 708 Gene3D - 439 501 IPR027417 -
Aed2g0725 708 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 314 342 IPR014014 GO:0003724
Aed2g0725 708 Pfam Helicase conserved C-terminal domain 519 614 IPR001650 -
Aed2g0725 708 Gene3D - 303 438 IPR027417 -
Aed2g0725 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 629 IPR027417 -
Aed2g0725 708 PANTHER BNAC02G41920D PROTEIN 438 694 - -
Aed2g0725 708 SMART helicmild6 544 614 IPR001650 -
Aed2g0725 708 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 439 447 IPR000629 -
Aed2g0725 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 494 IPR027417 -
Aed2g0725 708 PANTHER RNA HELICASE 438 694 - -
Aed2g0725 708 MobiDBLite consensus disorder prediction 75 99 - -
Aed2g0725 708 PANTHER BNAC02G41920D PROTEIN 307 439 - -
Aed2g0725 708 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 493 IPR014001 -
Aed2g0725 708 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 653 IPR001650 -
Aed2g0725 708 SMART ultradead3 333 508 IPR014001 -
Aed2g0725 708 MobiDBLite consensus disorder prediction 670 708 - -
Aed2g0725 708 Gene3D - 502 660 IPR027417 -
Aed2g0725 708 Pfam DEAD/DEAH box helicase 339 439 IPR011545 GO:0003676|GO:0005524
Aed2g0725 708 Pfam NAD(P)H dehydrogenase subunit S 164 215 IPR021659 GO:0009767
Aed2g0725 708 PANTHER RNA HELICASE 307 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0725 Aed-Chr2 5229849 5238879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0725 311 646 Eukaryotic Initiation Factors Gene Family AT3G19760 26.933 8.40e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0725 K14777 - gmx:100775796 714.916