Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0723 ATGGAACCAGCAACAGCAGCAGCTACCTCTTCTCAGAGAAAGCTGAAGAGAAAGCGAGGGTCAGCAAAAGCCGATCCCGAAATCGACCGTCTCAACTCGCTTCCGTGGAACTCAGCACTTCCTCAAAACGACGACGATGACGCTTTCTCCATGTTCACTGGCACCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCTGAGTATGGTTTGAGTATTCCTGAACCTGAAGTTGACAAGAGGAAGACGAATAATAATAAGAAGAAGTCTGAACAGAACGAAAATGTGAAGAAACAGCTGCAGGATGGAGCTGATGGTGCTTGTAGCGATGCGGTGGTCGAAGCAGAGTTAGATGAAAGTGTGAAATCTAAAGAGAAGAAGAAAAAGAAGAAGAAGAAAAACAAAAAGAAGGATGCTGGAGAAGACCAGAAAGTTGAGCAATCAGATGCTGGTTTAGATGCTAATGTGAAGGATGATACTGGGGAAGAGGATATTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCACTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCTTTTGGTTTGCCCATTTTGCAACGCCTTTTGGAGGAGAGAGAGAAGGATGCAAAGATGGTTGAAGAAACGGATGAAGAACCTGAAAAGTATTCTTCTAGAGGCCTGTTGAGGGCTCTTATTATTGCTCCGACTAGAGAACTTGCACTTCAGGTCACTGAACATCTGAAAGCAGTAGCCAAGCATATTAATGTTAGGGTGACCCCTATAGTTGGGGGAATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTCGGGACTCCAGGAAGATTATGGGAACTTATGTCAGGTGGACAAAAACATCTAGTTGAGTTACATTCACTGTCTTTCTTTGTGCTCGATGAGGCTGATCGTATGGTACAAAATGGTCATTTTAAGGAGCTGCAGTCAATAATTGATATGCTTCCCATGTCCAACAATTCCACTGAAGATAATTCTCAACATGTACAAAGTTGTGTTACAGTATCTAGTTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTATCTACTGATTTTCGCAAGAAGCTAAAACGTGGCTCAACTCAACAAAAGAAACCATTGACAGAAGGCCTGAATTCTATTGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATCATTGATCTTACTAATCCATCTATATTAACAACTAATCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCCTATTTGTATTATATTTTGACTGTCCATGGACAAGGCCGCACAATAGCCATGGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACGGCCAGAGCTTCTGCTGAAGGTTGTAGTATTGCTTTAATATCATCAGGAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCGGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGAATTAGTTACAGAAAATGATGACAGTGAAGAGGAGCAAGTGAACAAACATAAGCAAATAAAGGCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGATCTCAGTAGGCTGATTTCACGACCATTACAATCAAAAACATTTTCGCATCGATATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAATTAGCAAAGCAAAAACTAAGTGATCGCCAGGGTTCAGTACTAGGCAAAAAGGGAAAATTGGTAGTGATTGGCCAAGATTGCGTGGACGCACTTCAGGCACTTCGAAGTGCCGGTGAAGAGGTGCGAATGGATGTCAAGCATTTGGCAGGAAAACCGAGAAATATGGAGAACTTAAAAAGAAAGCGAAAAGAGGAGAAAAAGCGTTTGCGTGATCAGCGTAGAAAGCAGAAGAAAAAGCTCAAATACGGGGATGAATAG 2322 0.422 MEPATAAATSSQRKLKRKRGSAKADPEIDRLNSLPWNSALPQNDDDDAFSMFTGTNELEGGFLSLEEIDEAEYGLSIPEPEVDKRKTNNNKKKSEQNENVKKQLQDGADGACSDAVVEAELDESVKSKEKKKKKKKKNKKKDAGEDQKVEQSDAGLDANVKDDTGEEDIDETEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKDAKMVEETDEEPEKYSSRGLLRALIIAPTRELALQVTEHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSGGQKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNNSTEDNSQHVQSCVTVSSYQRKKRQTLVFSATVALSTDFRKKLKRGSTQQKKPLTEGLNSIETLSERAGMRSNAAIIDLTNPSILTTNLEESFIECREEDKDAYLYYILTVHGQGRTIAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISSGDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKSWFDRNASSVELVTENDDSEEEQVNKHKQIKASSRQLKKLQEDLSRLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLAKQKLSDRQGSVLGKKGKLVVIGQDCVDALQALRSAGEEVRMDVKHLAGKPRNMENLKRKRKEEKKRLRDQRRKQKKKLKYGDE 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0723 773 SMART ultradead3 194 430 IPR014001 -
Aed2g0723 773 MobiDBLite consensus disorder prediction 73 109 - -
Aed2g0723 773 Pfam DEAD/DEAH box helicase 199 407 IPR011545 GO:0003676|GO:0005524
Aed2g0723 773 Coils Coil 743 767 - -
Aed2g0723 773 SMART helicmild6 467 545 IPR001650 -
Aed2g0723 773 Coils Coil 641 661 - -
Aed2g0723 773 Pfam Helicase conserved C-terminal domain 485 544 IPR001650 -
Aed2g0723 773 Gene3D - 122 423 IPR027417 -
Aed2g0723 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 407 IPR027417 -
Aed2g0723 773 MobiDBLite consensus disorder prediction 122 167 - -
Aed2g0723 773 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 85 694 - -
Aed2g0723 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 424 IPR014001 -
Aed2g0723 773 Gene3D - 453 612 IPR027417 -
Aed2g0723 773 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 175 203 IPR014014 GO:0003724
Aed2g0723 773 PANTHER RNA HELICASE 85 694 - -
Aed2g0723 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 582 IPR027417 -
Aed2g0723 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 585 IPR001650 -
Aed2g0723 773 Coils Coil 118 138 - -
Aed2g0723 773 MobiDBLite consensus disorder prediction 737 773 - -
Aed2g0723 773 CDD DEADc_DDX24 186 451 - -
Aed2g0723 773 Coils Coil 235 255 - -
Aed2g0723 773 MobiDBLite consensus disorder prediction 140 162 - -
Aed2g0723 773 MobiDBLite consensus disorder prediction 77 102 - -
Aed2g0723 773 MobiDBLite consensus disorder prediction 751 765 - -
Aed2g0723 773 MobiDBLite consensus disorder prediction 35 50 - -
Aed2g0723 773 MobiDBLite consensus disorder prediction 1 54 - -
Aed2g0723 773 CDD SF2_C_DEAD 462 554 - -
Aed2g0723 773 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 346 354 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0723 Aed-Chr2 5217447 5224770 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0723 176 570 Eukaryotic Initiation Factors Gene Family AT1G72730 27.119 1.55e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0723 K14805 - gmx:100806018 1274.61