Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0711 ATGTCATTCACAGGAACTCTTGACAAATGCGCAGAATGCGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAGGGAGTCACTTACCATAAAAACTGCTTCAAATGCAGTCACTGCAAGGGATTTCTTACGATGGGCACATACTCCTCCATGGATGGAATTCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTGGTAAGACGATCCAAAATTTTGTGCTATTCTCATCCAAACTCAAAGTACAAAACAAAACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTTTGCACAAAAACAGTCTATCCATTGGAAAAGGTGTCACTTGAAGGGGAATGCTTCCACAAGACTTGCTTTAGGTGTGCTCATGGAGGGTGCACTCTCACACACTCAAACTATGCTGCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTTTCACAACTTTTCATGGAGAAAGGTAACTACACTCATGTGCTCCAAGCAGCAGCACACAGAAGGACTGGTTCATGCACACCTCCAATGCTAGAGGATCTATCACAACCACTAGAGCCAGAATCAGAAGCAGTAGCAGAAGCAGAAGCAGTAGCAGAAGCGGAAGTAGAAGCAGTATCTGAAGACAAAACAAAAGAACACATCACTCCTCTTGAATGA 705 0.4369 MSFTGTLDKCAECDKTVYVVDLLTLEGVTYHKNCFKCSHCKGFLTMGTYSSMDGILYCKTHFEQLFKESGNFSKNFGKTIQNFVLFSSKLKVQNKTPSKLSSMFSGTLDKCAVCTKTVYPLEKVSLEGECFHKTCFRCAHGGCTLTHSNYAALDGVLYCRVHFSQLFMEKGNYTHVLQAAAHRRTGSCTPPMLEDLSQPLEPESEAVAEAEAVAEAEVEAVSEDKTKEHITPLE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0711 234 Pfam LIM domain 10 65 IPR001781 -
Aed2g0711 234 Pfam LIM domain 111 166 IPR001781 -
Aed2g0711 234 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 204 - -
Aed2g0711 234 PANTHER OS06G0237300 PROTEIN 1 204 IPR045268 GO:0051015
Aed2g0711 234 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Aed2g0711 234 MobiDBLite consensus disorder prediction 218 234 - -
Aed2g0711 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Aed2g0711 234 Gene3D Cysteine Rich Protein 107 175 - -
Aed2g0711 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Aed2g0711 234 MobiDBLite consensus disorder prediction 215 234 - -
Aed2g0711 234 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Aed2g0711 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aed2g0711 234 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aed2g0711 234 SMART lim_4 9 61 IPR001781 -
Aed2g0711 234 SMART lim_4 110 162 IPR001781 -
Aed2g0711 234 Gene3D Cysteine Rich Protein 5 72 - -
Aed2g0711 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0711 Aed-Chr2 5133308 5135607 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aed2g0711 LIM 6.7e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0711 - K09377 gmx:100800234 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0711 2 5133308 5135607 Aed2g0711 2 5133308 5135607 ECH