Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0673 ATGGCTGTGGTGAGTCCTATGCCTGCAACTCCCCAACGGGTCAATTCTAAGAGCACACTTCGTGATATTGGAGTTCCTGAAATCATGACCATTAGGAGAGAGATTCCAAATAAGCCTAGTCCAAGTATGGCCAATGACACAATCTATGTTGCTGTGGCAAAAGATGTGAAAGATAGCAAATTAAATCTCGTATGGGCAATACAAAACTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCATGTTCCAGCTTCTACCATCCCCTTGATGGGTGCAAAATTTCTTGCAAGTGCGCTCAGAGAGGAGGAAGTTCAAGATTACCACGAGAGAGAAAGGCTAAAAATGCACAAGACTTTGGATGACTATCTTTTTATCTGTCAAAGGATGGGGGTGCGCGCATGGAAACTACACATTGAAGTTGATTGCATAGAAAAAGGAATTGTTGAACTCATCTCCCGGAGGATGACATCCCTCAGGTCTAAGAAAGCCCTATATGTATGTGAACAAGCTCCAGCCTCTTGTCATATACAGTTTATCTGCAATGGCTACCTCATACACACAAGGTCTATCAATGAGGGAAATAGGAGGAGCCTTGGATCTGTTTCTTCTTCAGAAGGGTTTTTAACTCCACAAAGCAATTTCAGTAAAGAAGAAAGTCCTTATGAGTTAGACCGGCGGTCACGGCGGAGTCCTTCAGTTTTCTCAATGTGCTCTGACAGTAGTTTTGGTGAACCAGGATTGACACCAAATTTGATTCATGATGGCAGTGAGAATGCGTTAGACTTGGCTTTGAATGGCCTTTCTTTGATTAATGAGGATCTTCATCATTTATCATCTCCCAGTGCACTGAATGGAGGAATGGATGATGGTCTCTATGATCAACTAGATCAGGCAAGGGCTGAGGCTTTGAATGCTCGGCGGGATGCATATCAAGAAACTGTTAGGCGTGGAAGAGCTGAAAAAGATGCCATTGATGCTATTCGCAGGGTTAAAACCACTGAAAACTTGTATAAAGAAGAGCTGAAGCTAAGGAAAGAACAAGAACAAGCAGTAGAGAAAGCAAATGAAGAACTTAATAACATGAAGAGCCAGACAGAAAAAGTTGATGAGGAACTCAGACTTGCCTTACATCAGAACTCATCACTAGAGAATCAAATTGCATCAACTAAACTTATGATAAAGGAGTTGGGGCAGAAGATCATATCTGCTGAGGACCTGATACAAAACTACAAGGATGAACTAGATGATTTGCAAATACAGCGCGATAATGCAGTAGGAGAGGCTGAGGAGTTAAGGAGAAAACAAGGGAAAGCCTCATCAAGCGCACAAGAGCTTCATCGCTTCTCAGAATTCTCCTTTCAAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCCTGAAGATCGGAGAAGGCGGATATGGAAGTATATTCAAAGGTATCTTGCATCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGACAGCAAGCAAGGACCTATGGAGTTTCAACAGGAGGTTGACGTATTGAGCAAGTTAAGGCACCCCAATCTTATCACACTTATAGGAGCCTGCCCAGAATCCTGGACTCTTGTCTATGAGTATTTACCCAATGGAAGCCTAGAAGATCGTCTCAACCGCAAGGGTAACACACCTGCATTATCATGGCAAACTCGAATCCGCGTTGCTGCAGAACTTTGCTCTGCTCTCATTTTTCTTCACTCCAACAAGCCTCACAGCATAGCGCATGGCGACTTAAAACCCGCCAACATTCTCCTTGATGCAAGCCTTGTTAGCAAGCTCAGTGACTTTGGAATAAGTCGCATATTATCATGTCAAGAGGGTTCTAGTGACAGTGCTACACAGTTTTGGAGGACTGTTCCAAAGGGAACTTTTGTGTATCTGGATCCTGAATTCCTTGCTACTGGTGAACTCACACCAAAGTCAGATGTTTACTCATTTGGAATCATTCTGTTGAGGCTGGTGACTGGGAGACCAGCCCTGGGAATAGTAAAGGATGTGCAATGTGCATTAGATGCTGGAAAGTTGAAATCCTTATTGGATCCTTTGGCTGGAGACTGGCCTTTTATGCTAGCTGAAGAATTGGTTCGCTTGGCTTTGAGGTGTTGTGTGATGAATCGAAAGAGCCGGCCGGAGCTTTATCCAGATGTCTGGAGAATACTGGAACCAATGAGGGCTTCTTCTGGAGACTCCAACACCTTTCAAATGGGTTCTCAAGGGCTATGCCAACCTCCTCCATATTTTATCTGTCCAATCTTTCTGGAGGTGATGCAAGATCCACATGTAGCTGCGGATGGTTTTACTTATGAAGCTGAGGCTATCCGTGAATGGCTGGAAAGTGGTAATGACACTTCACCAAGGACAAATTCCAAGCTTGCTCATCGCAAACTTGTTCCCAACCACGCTCTTCGCCATGCAATCCAGGACTGGCTTCAACGTCACTGA 2466 0.4388 MAVVSPMPATPQRVNSKSTLRDIGVPEIMTIRREIPNKPSPSMANDTIYVAVAKDVKDSKLNLVWAIQNSGGRRICILHVHVPASTIPLMGAKFLASALREEEVQDYHERERLKMHKTLDDYLFICQRMGVRAWKLHIEVDCIEKGIVELISRRMTSLRSKKALYVCEQAPASCHIQFICNGYLIHTRSINEGNRRSLGSVSSSEGFLTPQSNFSKEESPYELDRRSRRSPSVFSMCSDSSFGEPGLTPNLIHDGSENALDLALNGLSLINEDLHHLSSPSALNGGMDDGLYDQLDQARAEALNARRDAYQETVRRGRAEKDAIDAIRRVKTTENLYKEELKLRKEQEQAVEKANEELNNMKSQTEKVDEELRLALHQNSSLENQIASTKLMIKELGQKIISAEDLIQNYKDELDDLQIQRDNAVGEAEELRRKQGKASSSAQELHRFSEFSFQEIKEATSNFNPSLKIGEGGYGSIFKGILHHTEVAIKMLSPDSKQGPMEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLNRKGNTPALSWQTRIRVAAELCSALIFLHSNKPHSIAHGDLKPANILLDASLVSKLSDFGISRILSCQEGSSDSATQFWRTVPKGTFVYLDPEFLATGELTPKSDVYSFGIILLRLVTGRPALGIVKDVQCALDAGKLKSLLDPLAGDWPFMLAEELVRLALRCCVMNRKSRPELYPDVWRILEPMRASSGDSNTFQMGSQGLCQPPPYFICPIFLEVMQDPHVAADGFTYEAEAIREWLESGNDTSPRTNSKLAHRKLVPNHALRHAIQDWLQRH 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0673 821 ProSiteProfiles U-box domain profile. 750 821 IPR003613 GO:0004842|GO:0016567
Aed2g0673 821 Pfam Protein kinase domain 467 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed2g0673 821 PANTHER OS02G0152300 PROTEIN 17 190 - -
Aed2g0673 821 SMART Ubox_2 754 817 IPR003613 GO:0004842|GO:0016567
Aed2g0673 821 Gene3D Transferase(Phosphotransferase) domain 1 536 745 - -
Aed2g0673 821 SUPERFAMILY Protein kinase-like (PK-like) 441 719 IPR011009 -
Aed2g0673 821 CDD RING-Ubox_WDSUB1_like 755 796 - -
Aed2g0673 821 PANTHER U-BOX KINASE FAMILY PROTEIN 17 190 - -
Aed2g0673 821 PANTHER U-BOX KINASE FAMILY PROTEIN 224 820 - -
Aed2g0673 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Aed2g0673 821 Coils Coil 337 371 - -
Aed2g0673 821 Gene3D Phosphorylase Kinase; domain 1 433 535 - -
Aed2g0673 821 ProSiteProfiles Protein kinase domain profile. 463 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed2g0673 821 ProSitePatterns Protein kinases ATP-binding region signature. 469 490 IPR017441 GO:0005524
Aed2g0673 821 MobiDBLite consensus disorder prediction 201 227 - -
Aed2g0673 821 MobiDBLite consensus disorder prediction 201 217 - -
Aed2g0673 821 SMART serkin_6 463 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed2g0673 821 Pfam U-box domain 752 821 IPR003613 GO:0004842|GO:0016567
Aed2g0673 821 Coils Coil 292 320 - -
Aed2g0673 821 CDD STK_N 47 182 - -
Aed2g0673 821 Coils Coil 379 434 - -
Aed2g0673 821 SUPERFAMILY RING/U-box 745 821 - -
Aed2g0673 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 750 821 IPR013083 -
Aed2g0673 821 PANTHER OS02G0152300 PROTEIN 224 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0673 Aed-Chr2 4868360 4874286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0673 1 821 U-box Gene Family AT2G45910 52.056 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed2g0673 Pkinase 6.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0673 - - gmx:100780079 1283.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0673 2 4868360 4874286 Aed2g0673 2 4868360 4874286 ECH
Aed2g0673 2 4868360 4874286 Aed3g0622 3 4424122 4430671 ECH
Aed3g0622 3 4424122 4430671 Aed2g0673 2 4868360 4874286 PCT