Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0661 ATGGCAGACGACAGTGTTCATGCAAAACATAGTGACAGTATTTTTAGATGCTCAAATAACAATTCTCCACACCGTTTTGAGAAGTTTCTTACTGAATTCTTAAGTGAGGTAGGGGGGTTTAAGCGTCATTTGCCTTTTCCGCCAATGTTAGGTTATGGGCGGCCTGTGAATTTGTATAAGTTGTTTTTGGTGGTGAGAGGAAATGGTGGATACGACACTGTTTGTAATGGAAACTTGTGGAACACAGTTGGGGAGAAGTCTGGGCTTGGAGTGAATGTTGGTTCTTCTGTGAAGTTGGTGTATACTAAGTACTTGAGTGCTTTGGATGCGAGGTTGAAGAAGGTTGCAGAGAGTAAGGTGTCCAGTGAGTGTGGTGTGGTGGATGATAGGGACAAGTTTGGGAGGCGTTTAATGGAGTTGCATGCTAAGGTGGAAGGGTTGTTGTTGAGTGGAGGCGAGAAGTGTGGGGACAATTATGATAAGAGCTTGGAGTTGGATCCATCTAGTGGTGATAATGATGATCAAAAGGGGAAGAGAGACATGTTCAATTGTAAGACGATGAAAGAGTCAGTGTTGGATATGTTGAGCTGGGTTACAGGTGCTGCAAAGAATCCATGTGATCCTGAACTTGGTTCAATGCCTGGAAAATCAATGTGGAAGTCTTGCAGTAATCAAGAGGTGTGGAAGCAAGTGTTGTTGTTTCGAGACGCAACTTTTCTCAAAAGAGGTTCTGATCTAAGTCGTGAACAACGTTATTGGCAGAGTCAGAAGATGCACCCTTCCTTGTATGAAGATCAACTTAGGACAAACTACAACATCAAAAAGAGGTTGAAAGGTGGCAAGAAGATTGACAAATCCAAGTCCTCTGATTCATCTGTAGGAACTAAGAATAGAGCACCACAAGGTCCTCATAATCGTTCTAAAAAACGGTTGCTTGATTCCTCTGATCATCATGCATACCCTTTGGGGGTAAATCATCAAGTTGAAATACTAGAATGGATCGGTGTGATTTCTGAAGGTTATTCTAAGTTTTCAGGGACCCAAATATGGCCACCGGCAACAGAAAATACCAAACTTCTTATTGAAAGTGACCCCATTGGAAAGGGAAGAGAAGATTCATGCAACTGCTTAGTTCCAAGTTCTGTTGAGTGTGCATTTCCTAAGAAGAGCAGGGTAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGGAACGCAGAGGATTCCAAAATAGGCATACTCCAGATAACATTAACAGTGACGACGACAATTATGAAACTAAACCACCCCTAAGGAATGTTTTTGGACATCAGACAACACATAATTCTAGACATCGGAAAAAATAG 1347 0.4165 MADDSVHAKHSDSIFRCSNNNSPHRFEKFLTEFLSEVGGFKRHLPFPPMLGYGRPVNLYKLFLVVRGNGGYDTVCNGNLWNTVGEKSGLGVNVGSSVKLVYTKYLSALDARLKKVAESKVSSECGVVDDRDKFGRRLMELHAKVEGLLLSGGEKCGDNYDKSLELDPSSGDNDDQKGKRDMFNCKTMKESVLDMLSWVTGAAKNPCDPELGSMPGKSMWKSCSNQEVWKQVLLFRDATFLKRGSDLSREQRYWQSQKMHPSLYEDQLRTNYNIKKRLKGGKKIDKSKSSDSSVGTKNRAPQGPHNRSKKRLLDSSDHHAYPLGVNHQVEILEWIGVISEGYSKFSGTQIWPPATENTKLLIESDPIGKGREDSCNCLVPSSVECAFPKKSRVDLVSYYFNVFMLERRGFQNRHTPDNINSDDDNYETKPPLRNVFGHQTTHNSRHRKK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0661 448 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 173 384 - -
Aed2g0661 448 SMART ARID_2 17 109 - -
Aed2g0661 448 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 45 145 - -
Aed2g0661 448 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 386 440 - -
Aed2g0661 448 CDD ARID 22 109 - -
Aed2g0661 448 ProSiteProfiles ARID domain profile. 20 113 IPR001606 GO:0003677
Aed2g0661 448 MobiDBLite consensus disorder prediction 160 179 - -
Aed2g0661 448 Gene3D - 6 124 IPR036431 GO:0003677
Aed2g0661 448 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 173 384 - -
Aed2g0661 448 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 386 440 - -
Aed2g0661 448 SUPERFAMILY ARID-like 21 115 IPR036431 GO:0003677
Aed2g0661 448 MobiDBLite consensus disorder prediction 278 313 - -
Aed2g0661 448 MobiDBLite consensus disorder prediction 412 428 - -
Aed2g0661 448 Pfam ARID/BRIGHT DNA binding domain 24 107 IPR001606 GO:0003677
Aed2g0661 448 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 45 145 - -
Aed2g0661 448 SMART bright_3 21 114 IPR001606 GO:0003677
Aed2g0661 448 MobiDBLite consensus disorder prediction 412 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0661 Aed-Chr2 4791124 4794115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0661 33 85 ARID Transcription Factor Family AT1G20910 43.636 7.55e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed2g0661 ARID 6.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0661 - - gmx:100779445 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0607 3 4305469 4311795 Aed2g0661 2 4791124 4794115 PCT