LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g0661	ATGGCAGACGACAGTGTTCATGCAAAACATAGTGACAGTATTTTTAGATGCTCAAATAACAATTCTCCACACCGTTTTGAGAAGTTTCTTACTGAATTCTTAAGTGAGGTAGGGGGGTTTAAGCGTCATTTGCCTTTTCCGCCAATGTTAGGTTATGGGCGGCCTGTGAATTTGTATAAGTTGTTTTTGGTGGTGAGAGGAAATGGTGGATACGACACTGTTTGTAATGGAAACTTGTGGAACACAGTTGGGGAGAAGTCTGGGCTTGGAGTGAATGTTGGTTCTTCTGTGAAGTTGGTGTATACTAAGTACTTGAGTGCTTTGGATGCGAGGTTGAAGAAGGTTGCAGAGAGTAAGGTGTCCAGTGAGTGTGGTGTGGTGGATGATAGGGACAAGTTTGGGAGGCGTTTAATGGAGTTGCATGCTAAGGTGGAAGGGTTGTTGTTGAGTGGAGGCGAGAAGTGTGGGGACAATTATGATAAGAGCTTGGAGTTGGATCCATCTAGTGGTGATAATGATGATCAAAAGGGGAAGAGAGACATGTTCAATTGTAAGACGATGAAAGAGTCAGTGTTGGATATGTTGAGCTGGGTTACAGGTGCTGCAAAGAATCCATGTGATCCTGAACTTGGTTCAATGCCTGGAAAATCAATGTGGAAGTCTTGCAGTAATCAAGAGGTGTGGAAGCAAGTGTTGTTGTTTCGAGACGCAACTTTTCTCAAAAGAGGTTCTGATCTAAGTCGTGAACAACGTTATTGGCAGAGTCAGAAGATGCACCCTTCCTTGTATGAAGATCAACTTAGGACAAACTACAACATCAAAAAGAGGTTGAAAGGTGGCAAGAAGATTGACAAATCCAAGTCCTCTGATTCATCTGTAGGAACTAAGAATAGAGCACCACAAGGTCCTCATAATCGTTCTAAAAAACGGTTGCTTGATTCCTCTGATCATCATGCATACCCTTTGGGGGTAAATCATCAAGTTGAAATACTAGAATGGATCGGTGTGATTTCTGAAGGTTATTCTAAGTTTTCAGGGACCCAAATATGGCCACCGGCAACAGAAAATACCAAACTTCTTATTGAAAGTGACCCCATTGGAAAGGGAAGAGAAGATTCATGCAACTGCTTAGTTCCAAGTTCTGTTGAGTGTGCATTTCCTAAGAAGAGCAGGGTAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGGAACGCAGAGGATTCCAAAATAGGCATACTCCAGATAACATTAACAGTGACGACGACAATTATGAAACTAAACCACCCCTAAGGAATGTTTTTGGACATCAGACAACACATAATTCTAGACATCGGAAAAAATAG	1347	0.4165	MADDSVHAKHSDSIFRCSNNNSPHRFEKFLTEFLSEVGGFKRHLPFPPMLGYGRPVNLYKLFLVVRGNGGYDTVCNGNLWNTVGEKSGLGVNVGSSVKLVYTKYLSALDARLKKVAESKVSSECGVVDDRDKFGRRLMELHAKVEGLLLSGGEKCGDNYDKSLELDPSSGDNDDQKGKRDMFNCKTMKESVLDMLSWVTGAAKNPCDPELGSMPGKSMWKSCSNQEVWKQVLLFRDATFLKRGSDLSREQRYWQSQKMHPSLYEDQLRTNYNIKKRLKGGKKIDKSKSSDSSVGTKNRAPQGPHNRSKKRLLDSSDHHAYPLGVNHQVEILEWIGVISEGYSKFSGTQIWPPATENTKLLIESDPIGKGREDSCNCLVPSSVECAFPKKSRVDLVSYYFNVFMLERRGFQNRHTPDNINSDDDNYETKPPLRNVFGHQTTHNSRHRKK	448

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed2g0661	448	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	173	384	-	-
Aed2g0661	448	SMART	ARID_2	17	109	-	-
Aed2g0661	448	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	45	145	-	-
Aed2g0661	448	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	386	440	-	-
Aed2g0661	448	CDD	ARID	22	109	-	-
Aed2g0661	448	ProSiteProfiles	ARID domain profile.	20	113	IPR001606	GO:0003677
Aed2g0661	448	MobiDBLite	consensus disorder prediction	160	179	-	-
Aed2g0661	448	Gene3D	-	6	124	IPR036431	GO:0003677
Aed2g0661	448	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1	173	384	-	-
Aed2g0661	448	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1	386	440	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g0661	Aed-Chr2	4791124	4794115	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g0661	33	85	ARID Transcription Factor Family	AT1G20910	43.636	7.55e-06	46.2

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Aed2g0661		ARID	6.1e-11	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g0661	-		-	gmx:100779445	297.36

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed3g0607	3	4305469	4311795	Aed2g0661	2	4791124	4794115	PCT

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