LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g0659	ATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACACCAGTGTATTACTATTGCCCCCCAACATTAGAAGAGCATGAGTCCTTAACGTCTAATGATGGTACGGCTGCTTCACTCACTACTGGATTGCTGATAGGCTTGAACCTGGAAACTTCCACACCTGATACATACCAGCCCCCTCCTGCACCTCTACCGTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCCGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGTGAAGATCTTGAAGAATCTGACTGTAAAGCTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGAACTGTCAAAAACTAAAGAATTCCATGCATTAGTAACAGAAGAAGAGGATGGCTGTCCCATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACTTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGTGATCAGGAGATGATATTTGACCAGACACTGAACTAG	576	0.4288	MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTAASLTTGLLIGLNLETSTPDTYQPPPAPLPYDMVLGGPASTDSESGRETVSGSSFETLITCEDLEESDCKAKANSAPISPSKAELSKTKEFHALVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g0659	191	SMART	ring_2	140	180	IPR001841	-
	Aed2g0659	191	PANTHER	ZINC FINGER, RING/FYVE/PHD-TYPE	1	191	-	-
	Aed2g0659	191	Pfam	Ring finger domain	140	180	IPR001841	-
	Aed2g0659	191	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED	1	191	-	-
	Aed2g0659	191	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	117	187	IPR013083	-
	Aed2g0659	191	ProSiteProfiles	Zinc finger RING-type profile.	140	181	IPR001841	-
	Aed2g0659	191	SUPERFAMILY	RING/U-box	130	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g0659	Aed-Chr2	4767274	4771450	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g0659	1	191	C3H Transcription Factor Family	AT4G00335	61.780	8.10e-83	241

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g0659	-		-	gmx:100792561	392.889

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed3g0605	3	4285622	4295096	Aed2g0659	2	4767274	4771450	PCT