Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0611 ATGTCCTCCCTCAACCTCTCTTCTCCTCCACCCCCGCCACCTTACCTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCTCTCGGCGTACTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGTACCCTCCGCCACCGCAGCAGCAGCAACAACAACCACCCCCACCACCACCACCACCACACCTCCGACGGCATCGTCCTCCCGCGCGTGATCTTTGTCGCCGAGGACGACGACACGCGCCACAACGACGTTGTCACGGGCCTCGAACAGGCCGTCATAAACTCCTACCCGAAATTCCCCTACCTCAAGGAAAGTAACTACGACAGCACGTGCTCGATCTGTTTGTGCGAATACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGTCGACACTACTTTCATCTGTGTTGTCTTGACCCGTGGCTCAAGCTTAACGGGTCCTGTCCCGTTTGTCGGAACTCCCCCATGCCGACGCCGCTGTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCCCATTTTGCTGGTTTGACCCACAGTGGAATCTCTTGTTGA 573 0.5881 MSSLNLSSPPPPPPYLTNLGFGYSIAIALGVLFLLSTLILSSYLCCRTLRHRSSSNNNHPHHHHHHTSDGIVLPRVIFVAEDDDTRHNDVVTGLEQAVINSYPKFPYLKESNYDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHFAGLTHSGISC 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0611 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 164 IPR013083 -
Aed2g0611 190 SMART ring_2 117 158 IPR001841 -
Aed2g0611 190 SUPERFAMILY RING/U-box 98 163 - -
Aed2g0611 190 CDD RING-H2_PA-TM-RING 116 159 - -
Aed2g0611 190 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Aed2g0611 190 Pfam Ring finger domain 116 159 IPR001841 -
Aed2g0611 190 PANTHER RING-H2 FINGER PROTEIN ATL67 6 181 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0611 Aed-Chr2 4418807 4419925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0611 9 179 C3H Transcription Factor Family AT5G06490 40.642 9.54e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0611 - - gmx:112997685 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0571 3 4038798 4039343 Aed2g0611 2 4418807 4419925 PCT