Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0586 ATGCGCTCTCACTCTTTTCCGTCACTTTCGTCTTTCGGGGGGGGGAAGAGATCGAGCTTCGCAACAATGGTGTACATCAAGGCTCAGAAATCAAGAGCATACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGAGCAAGGATTCGGTTGATTAACCAGGACAAGAACAAGTACAACACACCGAAGTATCGATTTGTCGTCCGATTTACCAACAAGGGGATTGTCGCCCAAATAATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCGGCATATGCACATGAGCTGCCACGCTATGGTCTTGAAGTAGGACTTACAAACTATGCTGCAGCTTATTGCATTGGGCTACTGTTGGCCCGACGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGTGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAAGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGCGGACATATTTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGAGGAATAGAAGCTGATGGTATTGAGGCGCTGTACAAGAAGGTTCATGCAGCCATCCGTGCTGATCCTACCCTCAAGAAATCTGCAAACCAGCCCCCGAAGGAGCACAAGAGGTAA 729 0.4595 MRSHSFPSLSSFGGGKRSSFATMVYIKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKGIVAQIISASIAGDIVLAAAYAHELPRYGLEVGLTNYAAAYCIGLLLARRVLKTLEMDEEYEGNVEGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPTLKKSANQPPKEHKR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0586 242 PANTHER RIBOSOMAL PROTEIN L5-RELATED 23 146 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed2g0586 242 Pfam Ribosomal L18 C-terminal region 212 242 IPR025607 -
Aed2g0586 242 PANTHER - 143 242 - -
Aed2g0586 242 SUPERFAMILY Translational machinery components 33 229 - -
Aed2g0586 242 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 36 146 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed2g0586 242 Hamap 50S ribosomal protein L18 [rplR]. 36 223 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed2g0586 242 Gene3D - 146 242 - -
Aed2g0586 242 Gene3D - 23 145 - -
Aed2g0586 242 PANTHER RIBOSOMAL PROTEIN L5-RELATED 143 242 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed2g0586 242 PRINTS Ribosomal protein L5 signature 106 126 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed2g0586 242 PRINTS Ribosomal protein L5 signature 42 61 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed2g0586 242 PRINTS Ribosomal protein L5 signature 65 84 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed2g0586 242 CDD Ribosomal_L18_L5e 63 153 - -
Aed2g0586 242 PANTHER - 23 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0586 Aed-Chr2 4258081 4262909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0586 23 242 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 67.547 5.07e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0586 K02932 - gmx:100805868 402.134