Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0556 ATGCCTACAAAGCTGTTATCCCAACTACGTCTTCTCCATCCCCTCCTTCCCATGAAGCCCCGTACTCTCCCTCTTCTCTCTCGACCCTTCTTTTTCCCTCCCTCCAAGTTCCTCCGTAACGCTCCGTTTAAGCCCCGCGCCTTCTCCACCGCTCGTGCCCACTCCCGGGACAGGGTTTCCGTTCGCCCCTTCAAGAGCCTCGTCGACGACGAGGCTGACCTCAGCAACTGGGTCGACGACTTGAGCTCCGACAATATGCGTCCCGCCCGGGGGAATGAGTTCAGCTCCGGCCGCGGCCGGGGCCGGGGCAGTGAAATGCGGTCTGGCCGGGGTCAGGGTCGGGGAAGTGAATTCCGGACTGGTCGAGGGAATGAATTCAGTTCCGGTCGGGGCAGAGACAGTGAATTCCGGAATGGTAGGGGGAATGAATTCAGCTCCGGCCGGGGCCGGGGGGGTGAAATGCGGTCCAGCCGGGGTCGGGGGAATGAATTCAGCTCGGGCCGGGGTCGGGGCAGGGGCAGGGGCAGGGGCAGCGGAGTCCAGACCGGTCGAGGCGGGCGTTTTGCTGATTCCGGCCGGTATAGCAGCGACGATGGCGAGCGTGAATTCCGGGCATCGAGGAATAACAACGGAGCTTCCACGCTGGGGAAGAGGAGCGGAGAGGATTTGAGGAGGGGGGGACAGAGTGGCAGTGCCAGGAGAAAGTTTCAACCGATGAGTAGTGATGATGATGATGAGGTGATTGATGGAAGAAAGTTGAAGGGTGGTGGATTTGGAGCTTTTCTTAGTGAAGATGAAGATGAGGATGAGGATGAAATTGAGGATGAAGATGAAGATGAGGAAGAGGATGAAGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCATTGTTTGGTCAACAAAATGGTTTGAACCAGAGGACCATTGAACCAACTCCGAGACCTTCCTCCACCAGCGGAGGATCTGATTCTTATTTAAGTGAAACCAGATTCGACCAATGTTCAATCTCCCCGCTGTCACTAAAAGGAGTCAAGGATGCTGGATATGAAAAAATGACCGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCAAAGGCCAAGACAGGCACTGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTGGTAAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTGCTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTAATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGACTTAGAGATCATACGGAGAATACTGCTGGTTTTGCAACCAGGCTGATGGGTGTGAAGGTCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAAAGACAAACTCTTATGTTTTCTGCCACTGTTCCTGAAGAGGTTCGTCAAGTCTGTCATGTTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTCCAAGAGGGAACTGAGGAGACACATTCACAGGTCCAGCAGACGCATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTCCTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACGGCTATGGTCACTAGACTTGTTGCTGATCTTCTTGGTGAATTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACACCGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACTGTAAAAGATTTGCCTATTGAGAAAGCTTCTGTGGTACCTTCAGTTGATCCTGATACTAAGAAAAAGGTGGAAAAAGCTCTATCCAAAGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAACCATGGGCCTTGATAACCCTCCAGCTATACCTAAGCTAGTCCTTGGAAAGATGGGCCTTAAGAATATCCCTGGTTTACGTGCTAAATAG 2403 0.494 MPTKLLSQLRLLHPLLPMKPRTLPLLSRPFFFPPSKFLRNAPFKPRAFSTARAHSRDRVSVRPFKSLVDDEADLSNWVDDLSSDNMRPARGNEFSSGRGRGRGSEMRSGRGQGRGSEFRTGRGNEFSSGRGRDSEFRNGRGNEFSSGRGRGGEMRSSRGRGNEFSSGRGRGRGRGRGSGVQTGRGGRFADSGRYSSDDGEREFRASRNNNGASTLGKRSGEDLRRGGQSGSARRKFQPMSSDDDDEVIDGRKLKGGGFGAFLSEDEDEDEDEIEDEDEDEEEDEGSEEEEILNKSRTALFGQQNGLNQRTIEPTPRPSSTSGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVVKSPPSDRDHRRPPIAVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHVALRRDHEFINTVQEGTEETHSQVQQTHLVAPLDKHFSFLYVLLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKASVVPSVDPDTKKKVEKALSKVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRTMGLDNPPAIPKLVLGKMGLKNIPGLRAK 800
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0556 800 SMART helicmild6 603 684 IPR001650 -
Aed2g0556 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 699 IPR027417 -
Aed2g0556 800 Gene3D - 268 546 IPR027417 -
Aed2g0556 800 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 362 545 IPR014001 -
Aed2g0556 800 MobiDBLite consensus disorder prediction 262 288 - -
Aed2g0556 800 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 331 359 IPR014014 GO:0003724
Aed2g0556 800 Pfam Helicase conserved C-terminal domain 577 684 IPR001650 -
Aed2g0556 800 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 579 727 IPR001650 -
Aed2g0556 800 MobiDBLite consensus disorder prediction 191 205 - -
Aed2g0556 800 MobiDBLite consensus disorder prediction 296 328 - -
Aed2g0556 800 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 302 798 - -
Aed2g0556 800 MobiDBLite consensus disorder prediction 78 328 - -
Aed2g0556 800 MobiDBLite consensus disorder prediction 237 252 - -
Aed2g0556 800 CDD SF2_C_DEAD 560 693 - -
Aed2g0556 800 SMART ultradead3 350 563 IPR014001 -
Aed2g0556 800 Pfam DEAD/DEAH box helicase 356 533 IPR011545 GO:0003676|GO:0005524
Aed2g0556 800 CDD DEADc_MSS116 338 547 - -
Aed2g0556 800 Gene3D - 554 778 IPR027417 -
Aed2g0556 800 PANTHER RNA HELICASE 302 798 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed2g0556 Aed-Chr2 4043850 4049102 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0556 331 715 Eukaryotic Initiation Factors Gene Family AT3G19760 28.715 2.75e-45 166
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0556 - - gmx:100799999 1186.02