Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed2g0556 | ATGCCTACAAAGCTGTTATCCCAACTACGTCTTCTCCATCCCCTCCTTCCCATGAAGCCCCGTACTCTCCCTCTTCTCTCTCGACCCTTCTTTTTCCCTCCCTCCAAGTTCCTCCGTAACGCTCCGTTTAAGCCCCGCGCCTTCTCCACCGCTCGTGCCCACTCCCGGGACAGGGTTTCCGTTCGCCCCTTCAAGAGCCTCGTCGACGACGAGGCTGACCTCAGCAACTGGGTCGACGACTTGAGCTCCGACAATATGCGTCCCGCCCGGGGGAATGAGTTCAGCTCCGGCCGCGGCCGGGGCCGGGGCAGTGAAATGCGGTCTGGCCGGGGTCAGGGTCGGGGAAGTGAATTCCGGACTGGTCGAGGGAATGAATTCAGTTCCGGTCGGGGCAGAGACAGTGAATTCCGGAATGGTAGGGGGAATGAATTCAGCTCCGGCCGGGGCCGGGGGGGTGAAATGCGGTCCAGCCGGGGTCGGGGGAATGAATTCAGCTCGGGCCGGGGTCGGGGCAGGGGCAGGGGCAGGGGCAGCGGAGTCCAGACCGGTCGAGGCGGGCGTTTTGCTGATTCCGGCCGGTATAGCAGCGACGATGGCGAGCGTGAATTCCGGGCATCGAGGAATAACAACGGAGCTTCCACGCTGGGGAAGAGGAGCGGAGAGGATTTGAGGAGGGGGGGACAGAGTGGCAGTGCCAGGAGAAAGTTTCAACCGATGAGTAGTGATGATGATGATGAGGTGATTGATGGAAGAAAGTTGAAGGGTGGTGGATTTGGAGCTTTTCTTAGTGAAGATGAAGATGAGGATGAGGATGAAATTGAGGATGAAGATGAAGATGAGGAAGAGGATGAAGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCATTGTTTGGTCAACAAAATGGTTTGAACCAGAGGACCATTGAACCAACTCCGAGACCTTCCTCCACCAGCGGAGGATCTGATTCTTATTTAAGTGAAACCAGATTCGACCAATGTTCAATCTCCCCGCTGTCACTAAAAGGAGTCAAGGATGCTGGATATGAAAAAATGACCGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCAAAGGCCAAGACAGGCACTGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTGGTAAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTGCTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTAATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGACTTAGAGATCATACGGAGAATACTGCTGGTTTTGCAACCAGGCTGATGGGTGTGAAGGTCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAAAGACAAACTCTTATGTTTTCTGCCACTGTTCCTGAAGAGGTTCGTCAAGTCTGTCATGTTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTCCAAGAGGGAACTGAGGAGACACATTCACAGGTCCAGCAGACGCATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTCCTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACGGCTATGGTCACTAGACTTGTTGCTGATCTTCTTGGTGAATTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACACCGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACTGTAAAAGATTTGCCTATTGAGAAAGCTTCTGTGGTACCTTCAGTTGATCCTGATACTAAGAAAAAGGTGGAAAAAGCTCTATCCAAAGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAACCATGGGCCTTGATAACCCTCCAGCTATACCTAAGCTAGTCCTTGGAAAGATGGGCCTTAAGAATATCCCTGGTTTACGTGCTAAATAG | 2403 | 0.494 | MPTKLLSQLRLLHPLLPMKPRTLPLLSRPFFFPPSKFLRNAPFKPRAFSTARAHSRDRVSVRPFKSLVDDEADLSNWVDDLSSDNMRPARGNEFSSGRGRGRGSEMRSGRGQGRGSEFRTGRGNEFSSGRGRDSEFRNGRGNEFSSGRGRGGEMRSSRGRGNEFSSGRGRGRGRGRGSGVQTGRGGRFADSGRYSSDDGEREFRASRNNNGASTLGKRSGEDLRRGGQSGSARRKFQPMSSDDDDEVIDGRKLKGGGFGAFLSEDEDEDEDEIEDEDEDEEEDEGSEEEEILNKSRTALFGQQNGLNQRTIEPTPRPSSTSGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVVKSPPSDRDHRRPPIAVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHVALRRDHEFINTVQEGTEETHSQVQQTHLVAPLDKHFSFLYVLLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKASVVPSVDPDTKKKVEKALSKVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRTMGLDNPPAIPKLVLGKMGLKNIPGLRAK | 800 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed2g0556 | 800 | SMART | helicmild6 | 603 | 684 | IPR001650 | - | |
Aed2g0556 | 800 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 408 | 699 | IPR027417 | - | |
Aed2g0556 | 800 | Gene3D | - | 268 | 546 | IPR027417 | - | |
Aed2g0556 | 800 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 362 | 545 | IPR014001 | - | |
Aed2g0556 | 800 | MobiDBLite | consensus disorder prediction | 262 | 288 | - | - | |
Aed2g0556 | 800 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 331 | 359 | IPR014014 | GO:0003724 | |
Aed2g0556 | 800 | Pfam | Helicase conserved C-terminal domain | 577 | 684 | IPR001650 | - | |
Aed2g0556 | 800 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 579 | 727 | IPR001650 | - | |
Aed2g0556 | 800 | MobiDBLite | consensus disorder prediction | 191 | 205 | - | - | |
Aed2g0556 | 800 | MobiDBLite | consensus disorder prediction | 296 | 328 | - | - | |
Aed2g0556 | 800 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 | 302 | 798 | - | - | |
Aed2g0556 | 800 | MobiDBLite | consensus disorder prediction | 78 | 328 | - | - | |
Aed2g0556 | 800 | MobiDBLite | consensus disorder prediction | 237 | 252 | - | - | |
Aed2g0556 | 800 | CDD | SF2_C_DEAD | 560 | 693 | - | - | |
Aed2g0556 | 800 | SMART | ultradead3 | 350 | 563 | IPR014001 | - | |
Aed2g0556 | 800 | Pfam | DEAD/DEAH box helicase | 356 | 533 | IPR011545 | GO:0003676|GO:0005524 | |
Aed2g0556 | 800 | CDD | DEADc_MSS116 | 338 | 547 | - | - | |
Aed2g0556 | 800 | Gene3D | - | 554 | 778 | IPR027417 | - | |
Aed2g0556 | 800 | PANTHER | RNA HELICASE | 302 | 798 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed2g0556 | Aed-Chr2 | 4043850 | 4049102 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed2g0556 | 331 | 715 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 28.715 | 2.75e-45 | 166 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed2g0556 | - | - | gmx:100799999 | 1186.02 |