LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g0556	ATGCCTACAAAGCTGTTATCCCAACTACGTCTTCTCCATCCCCTCCTTCCCATGAAGCCCCGTACTCTCCCTCTTCTCTCTCGACCCTTCTTTTTCCCTCCCTCCAAGTTCCTCCGTAACGCTCCGTTTAAGCCCCGCGCCTTCTCCACCGCTCGTGCCCACTCCCGGGACAGGGTTTCCGTTCGCCCCTTCAAGAGCCTCGTCGACGACGAGGCTGACCTCAGCAACTGGGTCGACGACTTGAGCTCCGACAATATGCGTCCCGCCCGGGGGAATGAGTTCAGCTCCGGCCGCGGCCGGGGCCGGGGCAGTGAAATGCGGTCTGGCCGGGGTCAGGGTCGGGGAAGTGAATTCCGGACTGGTCGAGGGAATGAATTCAGTTCCGGTCGGGGCAGAGACAGTGAATTCCGGAATGGTAGGGGGAATGAATTCAGCTCCGGCCGGGGCCGGGGGGGTGAAATGCGGTCCAGCCGGGGTCGGGGGAATGAATTCAGCTCGGGCCGGGGTCGGGGCAGGGGCAGGGGCAGGGGCAGCGGAGTCCAGACCGGTCGAGGCGGGCGTTTTGCTGATTCCGGCCGGTATAGCAGCGACGATGGCGAGCGTGAATTCCGGGCATCGAGGAATAACAACGGAGCTTCCACGCTGGGGAAGAGGAGCGGAGAGGATTTGAGGAGGGGGGGACAGAGTGGCAGTGCCAGGAGAAAGTTTCAACCGATGAGTAGTGATGATGATGATGAGGTGATTGATGGAAGAAAGTTGAAGGGTGGTGGATTTGGAGCTTTTCTTAGTGAAGATGAAGATGAGGATGAGGATGAAATTGAGGATGAAGATGAAGATGAGGAAGAGGATGAAGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCATTGTTTGGTCAACAAAATGGTTTGAACCAGAGGACCATTGAACCAACTCCGAGACCTTCCTCCACCAGCGGAGGATCTGATTCTTATTTAAGTGAAACCAGATTCGACCAATGTTCAATCTCCCCGCTGTCACTAAAAGGAGTCAAGGATGCTGGATATGAAAAAATGACCGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCAAAGGCCAAGACAGGCACTGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTGGTAAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTGCTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTAATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGACTTAGAGATCATACGGAGAATACTGCTGGTTTTGCAACCAGGCTGATGGGTGTGAAGGTCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAAAGACAAACTCTTATGTTTTCTGCCACTGTTCCTGAAGAGGTTCGTCAAGTCTGTCATGTTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTCCAAGAGGGAACTGAGGAGACACATTCACAGGTCCAGCAGACGCATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTCCTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACGGCTATGGTCACTAGACTTGTTGCTGATCTTCTTGGTGAATTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACACCGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACTGTAAAAGATTTGCCTATTGAGAAAGCTTCTGTGGTACCTTCAGTTGATCCTGATACTAAGAAAAAGGTGGAAAAAGCTCTATCCAAAGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAACCATGGGCCTTGATAACCCTCCAGCTATACCTAAGCTAGTCCTTGGAAAGATGGGCCTTAAGAATATCCCTGGTTTACGTGCTAAATAG	2403	0.494	MPTKLLSQLRLLHPLLPMKPRTLPLLSRPFFFPPSKFLRNAPFKPRAFSTARAHSRDRVSVRPFKSLVDDEADLSNWVDDLSSDNMRPARGNEFSSGRGRGRGSEMRSGRGQGRGSEFRTGRGNEFSSGRGRDSEFRNGRGNEFSSGRGRGGEMRSSRGRGNEFSSGRGRGRGRGRGSGVQTGRGGRFADSGRYSSDDGEREFRASRNNNGASTLGKRSGEDLRRGGQSGSARRKFQPMSSDDDDEVIDGRKLKGGGFGAFLSEDEDEDEDEIEDEDEDEEEDEGSEEEEILNKSRTALFGQQNGLNQRTIEPTPRPSSTSGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVVKSPPSDRDHRRPPIAVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHVALRRDHEFINTVQEGTEETHSQVQQTHLVAPLDKHFSFLYVLLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKASVVPSVDPDTKKKVEKALSKVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRTMGLDNPPAIPKLVLGKMGLKNIPGLRAK	800

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g0556	800	SMART	helicmild6	603	684	IPR001650	-
	Aed2g0556	800	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	408	699	IPR027417	-
	Aed2g0556	800	Gene3D	-	268	546	IPR027417	-
	Aed2g0556	800	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	362	545	IPR014001	-
	Aed2g0556	800	MobiDBLite	consensus disorder prediction	262	288	-	-
	Aed2g0556	800	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	331	359	IPR014014	GO:0003724
	Aed2g0556	800	Pfam	Helicase conserved C-terminal domain	577	684	IPR001650	-
	Aed2g0556	800	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	579	727	IPR001650	-
	Aed2g0556	800	MobiDBLite	consensus disorder prediction	191	205	-	-
	Aed2g0556	800	MobiDBLite	consensus disorder prediction	296	328	-	-
	Aed2g0556	800	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 25	302	798	-	-
	Aed2g0556	800	MobiDBLite	consensus disorder prediction	78	328	-	-
	Aed2g0556	800	MobiDBLite	consensus disorder prediction	237	252	-	-
	Aed2g0556	800	CDD	SF2_C_DEAD	560	693	-	-
	Aed2g0556	800	SMART	ultradead3	350	563	IPR014001	-
	Aed2g0556	800	Pfam	DEAD/DEAH box helicase	356	533	IPR011545	GO:0003676\|GO:0005524
	Aed2g0556	800	CDD	DEADc_MSS116	338	547	-	-
	Aed2g0556	800	Gene3D	-	554	778	IPR027417	-
	Aed2g0556	800	PANTHER	RNA HELICASE	302	798	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g0556	Aed-Chr2	4043850	4049102	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g0556	331	715	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.715	2.75e-45	166

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g0556	-		-	gmx:100799999	1186.02