Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0550 ATGGGCATCTTGGAATTTCTTTTTCCCTTCTTCGTCTTTTCTGTCATATATGCTGCCTCAGATGATTGCCAATTTTCTATATGTGGCAACAATAGTATCCTTATTCGTTTCCCCTTTCTACTACAAGGTGATCAAAATCCTTATTGTGGCTATCCTGGTTTCAACTTAACTTGTACGAATAATAGCAAAACAGTGCTAAAACTCCCTTACTCTGGTGCATTCTATGTGCGCAATATCAACTACCTCACACAAAAGATACAAGTCTACGACCCTGATGATTGCCTCCCGAAACGTCTTCTGAGCCTCAATGTCTCAGGTTCTCCTTTTAACCCAACTTTTACTCGTAACTACACCTTCCTAAGCTGTCCATTTCAGAACGCAGGGTCACAATTCATTCCCATCGACTGCCTCAGTAATTCCACAAATTTTGTATCTGCTATCCCTACACTAAGCTTGACGAATCCATTACCTGAGTCTTGTTATGTTAGCTCAAGGCTTTCAGTCCCAGTTGAAGCAAGGCCAGAGCAGCAGTATGATGAGGAGAATTTCAAAGATGAGCTTAGTGAAGATCTTCGATTAGCATGGGATATACCTGACTGCAGATATTGTGAATCGCGACAGCAATTGTGTAGATTTGATCCAAATAGCAACGGTCAACTCTTGTGTTTCTCTGGTACAGCACGGGGTGGAGTCCAAGTGTTTAGAATAATAACACTATGCATCGCCGGACCAGCAGCGGTGTTCGCAATAGTGATGGCATGCTGCGTGTGCTACAAGGACAGACTAGCCCACATTCGCAACAGCGCCATTGCCGCAGCGAGGTCCGCACCAGCCACAATATCGCCGGCGCCGCCAATCGTAACCACCGGTCTGGACGAGTCGACGATCGAGTCTTACGAGAAGGTGGTGCTTGGAGAGAGTCGACGAGTTCCTGGACCCAACAACGGATCGTGTTGTTGCATATGCTTGTCGGAGTACAGTAGCAAAGAGACCATAAGATTGATTCCTGAATGCAAACACTGCTTCCATGCTGATTGCATTGACGAGTGGCTTCGAATAAACACCACGTGCCCAGTTTGCCGTAACTCTCCCTCGCCTTCTCCTCTTCATTTTTTTTTTCTTACATCCTCAAAGTTTTGTCCATACCCACAACAAATGAGGTGA 1164 0.4545 MGILEFLFPFFVFSVIYAASDDCQFSICGNNSILIRFPFLLQGDQNPYCGYPGFNLTCTNNSKTVLKLPYSGAFYVRNINYLTQKIQVYDPDDCLPKRLLSLNVSGSPFNPTFTRNYTFLSCPFQNAGSQFIPIDCLSNSTNFVSAIPTLSLTNPLPESCYVSSRLSVPVEARPEQQYDEENFKDELSEDLRLAWDIPDCRYCESRQQLCRFDPNSNGQLLCFSGTARGGVQVFRIITLCIAGPAAVFAIVMACCVCYKDRLAHIRNSAIAAARSAPATISPAPPIVTTGLDESTIESYEKVVLGESRRVPGPNNGSCCCICLSEYSSKETIRLIPECKHCFHADCIDEWLRINTTCPVCRNSPSPSPLHFFFLTSSKFCPYPQQMR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0550 387 SUPERFAMILY RING/U-box 318 365 - -
Aed2g0550 387 ProSiteProfiles Zinc finger RING-type profile. 319 361 IPR001841 -
Aed2g0550 387 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Aed2g0550 387 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 368 - -
Aed2g0550 387 Pfam Ring finger domain 319 361 IPR001841 -
Aed2g0550 387 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 368 - -
Aed2g0550 387 SMART ring_2 319 360 IPR001841 -
Aed2g0550 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 366 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0550 Aed-Chr2 3986089 3990153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0550 28 366 C3H Transcription Factor Family AT2G25410 43.553 4.18e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0550 - - gmx:100798415 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0550 2 3986089 3990153 Aed2g0550 2 3986089 3990153 ECH
Aed2g2659 2 28774292 28775880 Aed2g0550 2 3986089 3990153 PCT