Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0548 ATGATAGTGAAGCGGACGATGAAAACCGAAACGCCGAACCTGAAGCGATGTAAGATTGAGGATTCCGAGAATGCGATTCAGAAGAAGCGTAGGGTGAACGGTTTTTACTCGCTGGGAGTGCCAGGGGATGCTGAATATTTCAGCAGCGGTTCTGGCTCTTGGAGCAGCGAAGGATCGTATTGGGGTGGTGGTGCCGGTGGTGAGGTTCAGTCCAATTCAAATTCCGTTCCTTTTAACCGGAAAGTGGCGAAGGAGGCGCGTCGGCCTCCGCTGATGCGGTCCTCGCGTGGCCGCGCCCAGAAGCTTCCGTCGAGGTTCAGTGACTCGGTCCTTGACGCTGCGGATGGAGACTCGAGCTTTGAGGATAATGTTAAGAGTTTTGTGGAGGATGGAAGGGGTGGCATTGGTGTGAAAGTGGAGAAGAGTGATAGTGTTTGTTATTCGTCTAGTGTTGAGAGAAGGACTGTTGTTAAGGCTGAGAGTAACACTTCTGGGATTAGTTTTGAGGATGTGGACCAAAAGCCCATTGGTGAGAAGAGGAGAGAGATTTACAAGCCGGAGGATTTTGCTTTGGGGGATATCGTTTGGGCAAAGTGTGGGAAGAGGTACCCGGCTTGGCCTGCTGTGGTGATTGATCCTGTTTTGGAGGCTCCAGAGTCGGTACTCAGCTGTTGTGTTCCCGGTGCGCTTTGCGTGATGTTTTTCGGTTATTCGAAGAATGGAACTCAAAGGGACTACGCGTGGGTGAAGCAGGGAATGGTGTTCCCCTTCTCGGAGTTCTTGGATAGGTTTCAGGGGCAGACCCGATTGTACAAGAGCAAGCCGAGTGACTTCCGCATGGCACTGGAGGAGGCAATGCTAGCAGAAGATGGTGTTCTGGAATCACATTTGGGAAGAGAGGAAGTAACTGATGTAGAAGTTCAGCTGGATGAACTTCCAGAGGCCACTGGTTCTTATGTTGATGAGGAATGCTGCGGCCAGGATCAGGATACAAGTTATTGCGCTGGCTGTGGTCTGATGTTTCCATGCAAAAACATGAAGAAAATTAAGGATTCAAATTGTGCACCCCAATTTTATTGCAAATATTGTTCTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGATCTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGTTGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATATCCAGCAAACTTTTCAAGGATCTGGAAAATACAGATTACTATTGTCCAGACTGCAACGGAAAGATCAATTGTAAATTACCAGAATCACAAACATTCAAGTCAAATATCGAATCAATAGAGAATAGCCAAAAATCTATGATACCTGAGAAAGTATTGGTGGTGTGCAATGGCATGGAAGGCTTTTACATCCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCTTGTGGTTCAAGAAAGCAGACACTTAGCGAATGGGAAAAACATACAGGTTGCAGAGCGAAGAAATGGAAACATAGTGTGAAAGTTCAAAGTACAATGTTACCACTGGAAAAATGGATGGCAGAAAACATTCCACTGGATGGAATACCCCAGCAGTTAGATCAACAGCAGATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGATTTTACTTCTTGGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCACAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCCATGGGAATCCTTAAAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTGATCTGTAAACAGAGCCATGGTTCCTGTATAACTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCAAGGGCAGGATATACAATGGAGTTGCATTCCATGGAGAAGAATGGGACTCAAATAACAAAAAAGTTAATATATTGTGCAATTCACAGGGTCCCGAATCCAGATTCTGTACTGGTCGTACACACCCCCCTGGGGATTTTCTCTCCCAGAACTTCTCTTCAAAATCAGAAGGGATGCTTAAGGGGATCAAGGTTAATTTCATCAAAGAGTATAGAGCTTAATGAATCTTCAGCCACTGAAAATGACCTAGTTGAGCCACTGTCTGCTGCCAGGTGTCGTGTGTACCGAAGGTCTCCTAATAAGAGGGCTGACGTGCCAATAATTCACTTACTGAGGGGATCCAGCCTTCATTCTTTAGGTGCAATAACTCAGTTGAACCACTTTAAGGATGCTGACGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTACGGGAAATGGAAAAATTTAGAGTTTGCTTTGGAAAATCAGGCATTCATGGATGGGGTCTCTTTGCCCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCATGTAAGGCGTAGTGTTGCTGATCTAAGGGAAGAAAAATACCGTTTAGAAGGCAAAGATTGCTATCTATTCAAGATCAGTGAGGAAGTGGTAGTTGATGCAACAAACAGTGGCAATATAGCACGTCTAATCAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTCTGGGTGATCAGGGGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTTGATCCAGATGAGCGGGACGATCTAAAAGTTCCATGCCTTTGCAAAGCTCCCAATTGTAGGAGATTTATGAATTAG 2787 0.4471 MIVKRTMKTETPNLKRCKIEDSENAIQKKRRVNGFYSLGVPGDAEYFSSGSGSWSSEGSYWGGGAGGEVQSNSNSVPFNRKVAKEARRPPLMRSSRGRAQKLPSRFSDSVLDAADGDSSFEDNVKSFVEDGRGGIGVKVEKSDSVCYSSSVERRTVVKAESNTSGISFEDVDQKPIGEKRREIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPVLEAPESVLSCCVPGALCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFLDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGREEVTDVEVQLDELPEATGSYVDEECCGQDQDTSYCAGCGLMFPCKNMKKIKDSNCAPQFYCKYCSKLRKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENTDYYCPDCNGKINCKLPESQTFKSNIESIENSQKSMIPEKVLVVCNGMEGFYIPKLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVQSTMLPLEKWMAENIPLDGIPQQLDQQQMPNSSPPRMLWGKECSGFYFLGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPAMGILKIPPNSFVKTCVICKQSHGSCITCCKCATYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAIHRVPNPDSVLVVHTPLGIFSPRTSLQNQKGCLRGSRLISSKSIELNESSATENDLVEPLSAARCRVYRRSPNKRADVPIIHLLRGSSLHSLGAITQLNHFKDADESKVFTSFKERLHHLREMEKFRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVHVRRSVADLREEKYRLEGKDCYLFKISEEVVVDATNSGNIARLINHSCMPNCYARIMSLGDQGSRIVLIAKTNVSAGEELTYDYLFDPDERDDLKVPCLCKAPNCRRFMN 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0548 928 Pfam PWWP domain 192 288 IPR000313 -
Aed2g0548 928 SUPERFAMILY FYVE/PHD zinc finger 370 431 IPR011011 -
Aed2g0548 928 SMART PostSET_3 912 928 IPR003616 -
Aed2g0548 928 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 537 - -
Aed2g0548 928 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 549 928 - -
Aed2g0548 928 SMART set_7 786 909 IPR001214 GO:0005515
Aed2g0548 928 Pfam SET domain 797 902 IPR001214 GO:0005515
Aed2g0548 928 Gene3D - 179 295 - -
Aed2g0548 928 CDD SET_SETD1-like 775 924 - -
Aed2g0548 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 664 IPR013083 -
Aed2g0548 928 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 928 IPR025780 -
Aed2g0548 928 SMART PHD_3 607 663 IPR001965 -
Aed2g0548 928 SMART PHD_3 372 424 IPR001965 -
Aed2g0548 928 PANTHER PHD FINGER PROTEINS 1 537 - -
Aed2g0548 928 Pfam PHD-finger 372 424 IPR019787 -
Aed2g0548 928 SUPERFAMILY Tudor/PWWP/MBT 182 318 - -
Aed2g0548 928 ProSiteProfiles PWWP domain profile. 191 260 IPR000313 -
Aed2g0548 928 ProSiteProfiles Post-SET domain profile. 912 928 IPR003616 -
Aed2g0548 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 429 IPR013083 -
Aed2g0548 928 ProSiteProfiles Extended PHD (ePHD) domain profile. 542 663 IPR034732 -
Aed2g0548 928 SUPERFAMILY SET domain 784 924 IPR046341 -
Aed2g0548 928 CDD PHD_TCF19_like 373 423 - -
Aed2g0548 928 Pfam PHD-zinc-finger like domain 557 662 - -
Aed2g0548 928 Gene3D SET domain 767 928 IPR046341 -
Aed2g0548 928 ProSiteProfiles Zinc finger PHD-type profile. 370 426 IPR019787 -
Aed2g0548 928 ProSiteProfiles SET domain profile. 786 903 IPR001214 GO:0005515
Aed2g0548 928 PANTHER PHD FINGER PROTEINS 549 928 - -
Aed2g0548 928 SMART PWWP_4 189 258 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0548 Aed-Chr2 3973189 3981363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0548 336 397 EF-hand Containing Proteins AT5G28340 64.516 1.60e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed2g0548 SET 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0548 - - jre:109010367 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0548 2 3973189 3981363 Aed2g0548 2 3973189 3981363 ECH