Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0538 ATGAAGATTGAGGTGGGGTTAGGAAGGGTGTGGAATGAGGAAGAGAAAGCAACGGTGGTGGAGGTTCTGGGTCGTGGGGCGTTTGATTACTTGATGGCAAATTCGGTTTCGAACGAGAATCTGTTAATGGCGTTTGGGAGTGGCGAGAATCTGCAGACCAAGCTCTCGGATCTCGTGGAGCGACCCAACGCGTCGAACTTTAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTATGGGGATTGGGTTCTGGGGTGGGGAGATGGGTGTTGCAGGGAACCGAGGGAGGGAGAAGAGGGTGGTGGAGGAGTGAAAAGTGTTGTTTTTGATGATGAGAAGGTTCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTTCACATGACTTTTGGGGGTTCTGATGAGGACAACTATGCTTTTGGGTTGGACCGTGTGACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCGGTGGACTCGGTGGTCCAGGTAAGTGTTTTGCCTCTGGGAAGCATTTGTGGTTTTCTGATGTCTTGAAATCTGGTTTTGATTACTGTGTGCGGTCTTTCTTGTCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTGCCTACTGATTTAGGGGTTGTGGAGATGGGTTCTGTGAGGATGGTTGGTGAGAGTCTTGAGTTGTTGCAGGCTGTCAAATCTGTGTTTTCTGCACAGGCTTCATCACTAGTCCCCCCAAGGATTAATAAGCCAATTGCACCATTGGAATTGCTGAGTCAAAAGAGAGATGGGAATGGGAGTGAGACAGCAAATGTTCTTTTTTCTGGAATGGCAATTGGGGATAAGAATAAGAATAATGCTAACAACAACAATAGTAATGGTAGAGTCGAGGGAGTTGGAGTTCCGAAGATTTTTGGGCAGGATTTGAATTCTGTGACTCAATTCAGGGAGAAACTTGCTGTGAGGAAAATGGAGGAGAGGCCGACCCCGACGCCGAGGCCATGGGGAGTTCATCCCAATGGGAATAGTATTGGCTTTCCGAATGGTGTTCATGGTTCTAGTTTGGGGACTGGTCGAGTTGTGAGGCAGCTTGGACCTCCTGAAATTCTTGCCCCTAGGTTGGCCAGCGCTGGCAATGTGCCTGATCTGGCCAATGGCGTGAGGCATGATTTTGTGCATAACAACTTTCAGCAGCAACGGCCGGTGCAGATGCAAATTGATTTCTCAGGGGCCACTTCGCGGGCTTCTGGGAGATCAGTCATTGCTGAGTCTGAGATTTCTGATGTTGAGGCATCATGCAAGGAGGAGAGGGTGAGTGTTGCCGATGACAGGAGGCCGAGGAAGCGGGGTAGGAAGCCGGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGGTTCTATGCCCTGCGAGCTGTTGTTCCAAATATCTCTAAGATGGACAAGGCATCGCTGTTGGGAGATGCTATTGCTTACATCAATGAGCTTCAAGCAAAACTCAAGACCATGGAGTCTGAGAGAGAGATTGGAAGCTCCTCTATGGATGGACCAGTATTGGAGGCCAATGCAAGAGTAGAGAATCATCAGAATGGAGCTCCTGACGTGGATGTTCAAGCTGCCCGAGACGGGGTCATTGTGAAGGTGAGCTGTCCTATTGATGTTCACCCCGTTTCAAAAGTCATTCAAACCTTCAAAGAGGCGGAAATTGGTGTTGTTGAATCAAAACTTACTGCTGCAAATGATACCGTTTTCCATACATTTGCAGTTAAGTCCCAAGGACCTGATCAGCTGACAAAGGATAAGTTGATTGCATTGTTTTCCAAAGAATCCAACACCATACAGACATTATGA 1890 0.4836 MKIEVGLGRVWNEEEKATVVEVLGRGAFDYLMANSVSNENLLMAFGSGENLQTKLSDLVERPNASNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPREGEEGGGGVKSVVFDDEKVQRMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPGGLGGPGKCFASGKHLWFSDVLKSGFDYCVRSFLSKSAGIQTVVLVPTDLGVVEMGSVRMVGESLELLQAVKSVFSAQASSLVPPRINKPIAPLELLSQKRDGNGSETANVLFSGMAIGDKNKNNANNNNSNGRVEGVGVPKIFGQDLNSVTQFREKLAVRKMEERPTPTPRPWGVHPNGNSIGFPNGVHGSSLGTGRVVRQLGPPEILAPRLASAGNVPDLANGVRHDFVHNNFQQQRPVQMQIDFSGATSRASGRSVIAESEISDVEASCKEERVSVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREIGSSSMDGPVLEANARVENHQNGAPDVDVQAARDGVIVKVSCPIDVHPVSKVIQTFKEAEIGVVESKLTAANDTVFHTFAVKSQGPDQLTKDKLIALFSKESNTIQTL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0538 629 Gene3D - 453 523 IPR036638 GO:0046983
Aed2g0538 629 CDD bHLH_AtAIB_like 457 534 - -
Aed2g0538 629 MobiDBLite consensus disorder prediction 438 471 - -
Aed2g0538 629 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 238 IPR025610 -
Aed2g0538 629 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 526 IPR036638 GO:0046983
Aed2g0538 629 SMART finulus 466 515 IPR011598 GO:0046983
Aed2g0538 629 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Aed2g0538 629 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 624 - -
Aed2g0538 629 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Aed2g0538 629 Coils Coil 499 519 - -
Aed2g0538 629 PANTHER MYC 1 624 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0538 Aed-Chr2 3902620 3904509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0538 5 628 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.238 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g0538 bHLH-MYC_N 3.4e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0538 - - gmx:100807078 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0538 2 3902620 3904509 Aed2g0538 2 3902620 3904509 ECH
Aed2g2668 2 28827448 28829106 Aed2g0538 2 3902620 3904509 PCT