Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0520 ATGAGGCCGATTTTCGCTGGGAACTTGGAGTACGATACTCGTCAATCAGAGCTCGAACGCTTATTCTCAAAGTATGGAAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTAGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTGTCAGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCGCGATGGATCGAAGGCAAACCAGAAGCCAACAAAAACTCTGTTTGTGATTAACTTTGACCCAATCCGTACTAGGGTTCGTGACATAGAAAAACACTTTGAACCTTATGGGAATGTTCTTCATGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTATAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAATATGCTCTGAGGGATGATGGTGAGAGGGGTGAGAATTATGACAGTCCTAGAAGAGGAGGGGGTTATGAAAGATCATCCAGTCCAGCTTATCACAGGCGACCAAGTCCTGACTATGGGGGTCGTCCACGCAGCCCTGTCTATGATAGGTATAATGGTGGTGGACCAGACAGGCGGAGGAGTCCTGATTATGGTAGGCACAGAAGTCCTCCTGATTATGGCAGGCGCCGGAGTCCTGATTATGGTGGGAAGCCAAGGACAAGGAGTCCTGAATATGGTAGATATCGCAGCCGTTCACCAGTGCGAAGGTCAAGAACATAA 792 0.4735 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKAIECTNMSKILDRVVSVEYALRDDGERGENYDSPRRGGGYERSSSPAYHRRPSPDYGGRPRSPVYDRYNGGGPDRRRSPDYGRHRSPPDYGRRRSPDYGGKPRTRSPEYGRYRSRSPVRRSRT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0520 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Aed2g0520 263 MobiDBLite consensus disorder prediction 210 255 - -
Aed2g0520 263 Gene3D - 1 83 IPR012677 -
Aed2g0520 263 Gene3D - 84 173 IPR012677 -
Aed2g0520 263 MobiDBLite consensus disorder prediction 165 263 - -
Aed2g0520 263 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 220 IPR029537 GO:0000398|GO:0005681
Aed2g0520 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Aed2g0520 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Aed2g0520 263 SMART rrm1_1 92 158 IPR000504 GO:0003723
Aed2g0520 263 SMART rrm1_1 3 70 IPR000504 GO:0003723
Aed2g0520 263 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 220 - -
Aed2g0520 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Aed2g0520 263 SUPERFAMILY RNA-binding domain, RBD 3 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0520 Aed-Chr2 3718606 3723092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0520 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 1.12e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0520 K12893 - gmx:100797709 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0520 2 3718606 3723092 Aed2g0520 2 3718606 3723092 ECH