Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0517 ATGATGGTTCTAGATATGTTATCTGGTCCCACTGGAACAGCCATTTCTCAAACTGTTGAGGCCATTGCTGATTTCCTAGTTACTGCAAATGATGTCCTTGTGAAGAAGGATAGTTTCAAGGAACTTTCTGCTTACATGGAAAGAATTAAGCCTGTCTTGGAAGAATTGAGGAAAGGAAAAGTCAGTGATTCTGAGACATTCAACCGTGCCATCGAGAACATGAACAGAGAAATTAAAGAGGCAAAGCAACTAACTGTAGAGTGCAGCAAGAAGAGCAGGGTTTATCTACTACTGAACTGCAGGTCCATAGCTAATAGCTTAGAAAACCACACAAAAGAGCTGAGTAGAGCACTTGGTCTTCTTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATGGTTGAAGAAATCAAGAAGCTATGTGACAATATGCAGACAGCAGGATTTAAGGCAGCTCAAGCTGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTGGACCGTTCCTACGCGAATAAATTGCTGAATCTCATTTCTGAGGCTGTTGGGATTAGGAATGAGAGTTCAACAATAAAGATGGAACTTGAAGAGTTCAAGAGTGAGATTGAGAGTGCACGCGTTAGGAAGGACTTAACTGAAGCTATGCATATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCTAAGGACAAGGAACTCAAATACTTTGCAAAACGCCAATCTTTAGGAAGTCAAATCTTGGAGCCTTTGCAGTCATTTTATTGCCCCATAACTCAGGATGTAATGGTGGATCCTGTAGAAATTTCATCAGGGCAGACATTTGAGAGAAGTGCCATAGAGAAGTGGTTTGCAGAAGGGAATAAATTGTGCCCCTTGACCTTGATTCCTTTAGACACATCAATTTTGAGGCCTAACAAAAAGTTGAAACAATCTATACAAGAGTGGAAGGATAGAAATATAATGATTACAATTGCTACATTGAAAGAAAAAATCCAGTCTGGAAATGATGAGGAAGTGCTGCAGGATCTGCAAACTCTTCAGACTTTGTGTGAAGAAAAAGACCAACACAGGGAATGGGTTATTCTGGAGAATTACATAACAACTCTCATCCAAATTCTGTCAAGAAACCGTGATATAAGGAAGTTATCTCTTGTCATTCTTGGCATGCTAGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTTCAACAGCTGACCATGCAATTGAATCGATTGTTCGATCTCTTGGACGTCGTCCTGAGGAAAGGAAATTAGCAGTAGCATTACTGCTTGAATTATCCAAATATGATTTGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTGTTGGTAACCATGTCAAGTGGAGATGACAGTCAAGCTGCTAGAGATGCAACAGAGCTATTGGAGAATCTTTCGTACTCCAATCAGAATGTTATACAGATGGCAAAAGCAAATTACTTCAAGCATTTATTGCAGCGTCTCTCCACAGGAGAAGATGATGTAAAGATGATTATGGCCACAAATTTAGCAGAAATGGAGTTAACTGACCACAATAGGGAGTCTTTGTTTGATGGCGGTGTACTGGTTCCTCTTCTTCAAATGTTCTCACATAATGATCTACAAGTGAAAATAGTTGCTATTAAAGCTCTTAGGAATTTATCCAGTTCAAAGATAAATGGACAGGAAATGATAAGACAGGGAGCTGCAAAGCCACTACTTAACCTCCTTTTCAATCAAAGCATACACACTGCAAGTTTGTGGGAAGATGTAGCAGGCATAATCATGCAACTTGCTGCATCAACTATCTCTCAGGATGCTCAAACACCTGTTTTATTACTAGATTCTGATGATGATGTTTTTAATCTCTTCACTCTAGTTACTGCCACACAGCCTGTTGTGCAAGTGCAACAGAACATTATCCAGACCTTTTATTCCTTGTGTCAAACACCCTCAGCTTCATTTATCAGAACCAAACTAATAGAGTGCTCAGCGATTCCAAAATTGCTTCAACTGTGTGAGAATGAAAACCTAAACCTACGAGCAAGCGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAAGGCATCATACAGGAGCATGTGAATCAGAAATGCATTAATACTCTACTCCAGATCATAAAATCTTTCTCTGATGAAGAGGAAATACTTTCTGCCATGGGAATAATATGCTATCTTCCAGAAGTTGACCAGATAACTCAGTGGCTTCTGGATGCTGGTGCACTACCAATCATTAATAGTTATGTCCAAGATGGGAAAGACAGAGATCATCAAAAGAACAACTTAGTAGAGAATGCCATTGGTGCCCTATGCCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGCGTGCAGCTGAAACTGGGATCATAACTGTTTTAGTGCAGCTGCTTGAAAATGGGACCAACTTGACAAAACAACGTGTGGCGCAGTCTCTAGCTCAATTTTCTAAAAGCTCATTTAAGCTGAGCCGGGCAGTACCAAAGCGCAAAGGACTATGGTGCTTCTCAGCTCCTGCTGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCATCATTTTGCCTTTTGGAGGCTCATGCAGTTGGACCACTAACAAGGACTCTTGGAGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAGACTGCAGAGTGGTAGTAAAGTGCTTTCAGAAGCAAATGCCATACCACTAATAATAAGATACCTTGGTTCCCCCTCCCCTGGCTTGCAGGAGAAGTCTCTGCATGCTTTGGAAAGGATTTTCCGGCTAGTCGAATACAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGGGCAATGGTAGTGTTAGATCCATGTCAGCTAGAATATTGGCACATTTGAACGTGCTTCATGACCAATCTTCATATTTCTAA 3015 0.4063 MMVLDMLSGPTGTAISQTVEAIADFLVTANDVLVKKDSFKELSAYMERIKPVLEELRKGKVSDSETFNRAIENMNREIKEAKQLTVECSKKSRVYLLLNCRSIANSLENHTKELSRALGLLPLATTGLSSGMVEEIKKLCDNMQTAGFKAAQAEEEILEKIESGIRENNVDRSYANKLLNLISEAVGIRNESSTIKMELEEFKSEIESARVRKDLTEAMHMDQIIALLERADAASSPKDKELKYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKKLKQSIQEWKDRNIMITIATLKEKIQSGNDEEVLQDLQTLQTLCEEKDQHREWVILENYITTLIQILSRNRDIRKLSLVILGMLAKDNEEAKERISTADHAIESIVRSLGRRPEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSSGDDSQAARDATELLENLSYSNQNVIQMAKANYFKHLLQRLSTGEDDVKMIMATNLAEMELTDHNRESLFDGGVLVPLLQMFSHNDLQVKIVAIKALRNLSSSKINGQEMIRQGAAKPLLNLLFNQSIHTASLWEDVAGIIMQLAASTISQDAQTPVLLLDSDDDVFNLFTLVTATQPVVQVQQNIIQTFYSLCQTPSASFIRTKLIECSAIPKLLQLCENENLNLRASAVKLFSCLVESCDEGIIQEHVNQKCINTLLQIIKSFSDEEEILSAMGIICYLPEVDQITQWLLDAGALPIINSYVQDGKDRDHQKNNLVENAIGALCRFTVPTNLEWQKRAAETGIITVLVQLLENGTNLTKQRVAQSLAQFSKSSFKLSRAVPKRKGLWCFSAPADIGCMVHGGICSVKSSFCLLEAHAVGPLTRTLGESDPGVCEASLDALLTLIEGERLQSGSKVLSEANAIPLIIRYLGSPSPGLQEKSLHALERIFRLVEYKQMYGASAQMPLVDLTQRGNGSVRSMSARILAHLNVLHDQSSYF 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0517 1004 Gene3D - 328 428 IPR011989 -
Aed2g0517 1004 Gene3D - 429 631 IPR011989 -
Aed2g0517 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1004 - -
Aed2g0517 1004 Coils Coil 64 91 - -
Aed2g0517 1004 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Aed2g0517 1004 Gene3D - 13 125 IPR036537 GO:0007166
Aed2g0517 1004 Coils Coil 199 219 - -
Aed2g0517 1004 SMART arm_5 748 795 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 706 745 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 568 611 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 527 567 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 362 401 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 663 704 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 444 485 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 403 443 IPR000225 GO:0005515
Aed2g0517 1004 SMART arm_5 916 956 IPR000225 GO:0005515
Aed2g0517 1004 Gene3D - 870 1002 IPR011989 -
Aed2g0517 1004 SUPERFAMILY RING/U-box 248 328 - -
Aed2g0517 1004 Gene3D - 632 853 IPR011989 -
Aed2g0517 1004 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Aed2g0517 1004 SUPERFAMILY ARM repeat 332 994 IPR016024 -
Aed2g0517 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1004 - -
Aed2g0517 1004 CDD RING-Ubox_PUB 262 302 IPR045210 -
Aed2g0517 1004 Pfam U-box domain 262 327 IPR003613 GO:0004842|GO:0016567
Aed2g0517 1004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 327 IPR013083 -
Aed2g0517 1004 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0517 Aed-Chr2 3699457 3705927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0517 249 1004 U-box Gene Family AT1G76390 28.129 9.30e-61 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0517 - - gmx:100799969 1754.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0517 2 3699457 3705927 Aed2g0517 2 3699457 3705927 ECH