Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0493 ATGTCTCAACAAAGGCAAACTCAGATGGTGGGTGGTAACAACAACCCGGACCAATATAATGACACAATGTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGAGACACAATGGGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGATAAGAACTCTGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCTGAGTCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGTAGAAGGGCTAACTGCAACCTTGCTTCTCTTGGTGCAAACAAAAACCGACCACCAACAACTTTTCACCATGGACGGTTCAGGCCTCCACCTGGACTAGTGGCATCACCTGCTGCTTATCATGGTTCTTCTTCTTCATCTACATTTTTCCATCATCCCCCTAGGCAATACACATTTCCTTATTCAGCATACGGATATTCTGGATATTCACAAGACACCTTGTATCCTACGGTAGGTAGTTATTATAATGTGTATGGAGTTCAGCAATTTTCACCTTACTACCCTTCTGCTGGAGCTTCTGGTGCAGTAGGGTTGATCCACAATATCTACCCCTTTTATGGTCAATATGCACAGAGTGTTAATCAGGCTCATGGTTTTGGGGTTCAATATCCCCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATAGTGTCATATCCTTCTTCAGTGGCAGTACCAACTGCTACTGGTGCAGTAACAGGAATTGCAACCACAACTGCAACTGCAACTACAACTACTAAAACATCAACAAGTGTGGTAGCAACAGTGGCTGGTGGTACTTCACAAGCCTCTTCTCAATCAGCCTCTGAACAAAATTCTACATCCACAAGGGATACAGAACTTGCAAGGCTAACCACATCAAAAGCTTAA 939 0.4398 MSQQRQTQMVGGNNNPDQYNDTMFTKIFVGGLAWETQRDTMGRYFEQFGEILEAVVITDKNSGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNRPPTTFHHGRFRPPPGLVASPAAYHGSSSSSTFFHHPPRQYTFPYSAYGYSGYSQDTLYPTVGSYYNVYGVQQFSPYYPSAGASGAVGLIHNIYPFYGQYAQSVNQAHGFGVQYPQMAQFPFLPQHYGSTGIVSYPSSVAVPTATGAVTGIATTTATATTTTKTSTSVVATVAGGTSQASSQSASEQNSTSTRDTELARLTTSKA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0493 312 SUPERFAMILY RNA-binding domain, RBD 5 109 IPR035979 GO:0003676
Aed2g0493 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Aed2g0493 312 Gene3D - 1 116 IPR012677 -
Aed2g0493 312 MobiDBLite consensus disorder prediction 281 312 - -
Aed2g0493 312 CDD RRM_RBM24_RBM38_like 25 100 - -
Aed2g0493 312 PANTHER - 1 282 - -
Aed2g0493 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Aed2g0493 312 SMART rrm1_1 26 98 IPR000504 GO:0003723
Aed2g0493 312 PANTHER BOULE-RELATED 1 282 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0493 Aed-Chr2 3465699 3467366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0493 27 101 C2H2 Transcription Factor Family AT2G19380 45.333 8.65e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0493 - - gmx:100788899 444.891