Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0482 ATGCCATTGCCAGCACCTAACAGTAACACTCTCCTTCTTCAAACTCACACCTTCGTCACACTTACACCCTCTTCTTCTTCTTCTTCTTCGTCCGTGCTGACCCTGCTGAAACAGTGCGAACCTCCTCCTCAAGTGAGACGGTTCGTTTTGCATTTCGCGTATCCAATTCCAAGGCGTTCCCGCACATTTCTAGAACCTTCTTCTTCTTTCTCTCCTCTGAGGAAAACTAGGGAGGATGTTTACCCAACCGAAAACGATGACGTTTTGGTGGACCAAGAAGAAGAAGGGCAGAAGAGTCTTGGAAAAGCGTGTGAAGTGTACGTGTGCAACCTGCCCCGAAGCTGTGACGCAGCATACCTACTTCATATCTTCAGACCTTATGGAACTATTCTATCCGTTGAGGTTTGCAGGAATGCTGAGACTAATGAAAGTAAGGGGTGTGGTTATGTGACATTGGGATCCATATACTCAGCAAGAAATGCAGTTGCTGCATTGGATGGATCAGATGTTGGTGGGCGCGAATTGCGGGTTCGATTTTCAATCGAGATGAATTCCAAAAGGAGGAGTTTTAACAAAATGAACTCTTCCACCAAGAGAATTTCATACTATGAATCTCCTCATAAGCTGTATGTTGGCAATCTTGCTAAGACTGTTAGACCTGAACAGCTGAGAGACCACTTTAGCAGATTTGGAAATGTAGTCAGTGCAAGAGTGTTGCATGATTTTAAACAAGGGAAAAGCCGAGTCTATGCCTTTCTCTCCTTTCAATCAGAGCCAGAACGTGTTGCAGCAATGTCTCTCAATGGAACAGTAAATAAAATCTCTGCTTCAACCACTTTATTATGA 846 0.4421 MPLPAPNSNTLLLQTHTFVTLTPSSSSSSSSVLTLLKQCEPPPQVRRFVLHFAYPIPRRSRTFLEPSSSFSPLRKTREDVYPTENDDVLVDQEEEGQKSLGKACEVYVCNLPRSCDAAYLLHIFRPYGTILSVEVCRNAETNESKGCGYVTLGSIYSARNAVAALDGSDVGGRELRVRFSIEMNSKRRSFNKMNSSTKRISYYESPHKLYVGNLAKTVRPEQLRDHFSRFGNVVSARVLHDFKQGKSRVYAFLSFQSEPERVAAMSLNGTVNKISASTTLL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0482 281 PANTHER OS02G0815200 PROTEIN 83 272 - -
Aed2g0482 281 CDD RRM_SF 209 271 - -
Aed2g0482 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 270 IPR000504 GO:0003723
Aed2g0482 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Aed2g0482 281 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 83 272 - -
Aed2g0482 281 CDD RRM_SF 106 178 - -
Aed2g0482 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 279 IPR000504 GO:0003723
Aed2g0482 281 SUPERFAMILY RNA-binding domain, RBD 103 194 IPR035979 GO:0003676
Aed2g0482 281 SMART rrm1_1 105 178 IPR000504 GO:0003723
Aed2g0482 281 SMART rrm1_1 208 277 IPR000504 GO:0003723
Aed2g0482 281 Gene3D - 58 189 IPR012677 -
Aed2g0482 281 Gene3D - 190 275 IPR012677 -
Aed2g0482 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Aed2g0482 281 SUPERFAMILY RNA-binding domain, RBD 204 271 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0482 Aed-Chr2 3362509 3370059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0482 106 271 Eukaryotic Initiation Factors Gene Family AT1G22760 31.361 3.16e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0482 - - gmx:100792560 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0482 2 3362509 3370059 Aed2g0482 2 3362509 3370059 ECH