Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0479 ATGGAGAGGCTCCAAGGACCCCAGCTCAATTCCTCTTTCTTTGGAGACCCTTTGGGAGTGAATTGTTTTGACCAAGTTCTGCTGGATGAAGAAAGCCTGAGACTAGAGGAGGAAGAGCAGTTTCTGATATCAAGTTTAGAGGACAACATGCCATTCCTTCAGATGCTTCAGAGTGTGGAGTCCCCACAATTTTTCCCTTTGAAAGAGCCAAACTTTCAAACACTTCTGAGGCTGCAGCACATGGCTACCACAAAGCCATGGGAAGGGATAGCCTATATTCCAAGAGTGGAAGCACAAGCACAAGCACAAGTGCAAGCAGCAGTATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCAGTGAAGTCAGAAAGCAATGAGCTCCAACACCCTCCTCTACTTTCAATTTCATCATGTGTTGAGAAAGTGAACTATGAGTGCAACCAGGAACCGCAGAAAGCATTATCAGTATCACAAACATGCCCCAAATCTCAGGCAGCAGCAGCCACAAGGGAAAGGAGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGACGCCAAATGAATGACCACCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTCGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGTGGTGGTGGTTCTTCTTCTTCTTCCACTACTATGTTATTGTGTAAGCCTAAGCCCCCACCACCATCATTATCATCACCACATGGTTTTGTAATGAGGTCATCAACAACAACTAGTGAGGAAGTGAACTGTGGGGATGAGGTGAAGGCAGAAAACAAGTCAGAGACAGCAGACATAATAGTGACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGAAGGCCAGGGCAATTGATAAAGGTTATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACTTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGATTGCAAGCTATGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCAAATATTCAGCTTCATTAATGGTAGCTAG 1218 0.4532 MERLQGPQLNSSFFGDPLGVNCFDQVLLDEESLRLEEEEQFLISSLEDNMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHMATTKPWEGIAYIPRVEAQAQAQVQAAVLELESCVTHDMLEMQSPVKSESNELQHPPLLSISSCVEKVNYECNQEPQKALSVSQTCPKSQAAAATRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGGSSSSSTTMLLCKPKPPPPSLSSPHGFVMRSSTTTSEEVNCGDEVKAENKSETADIIVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEDCKLCSASDIAEAVHQIFSFINGS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0479 405 CDD bHLH_AtFAMA_like 198 264 - -
Aed2g0479 405 PANTHER MAX DIMERIZATION, MAD 21 404 - -
Aed2g0479 405 Gene3D - 185 263 IPR036638 GO:0046983
Aed2g0479 405 MobiDBLite consensus disorder prediction 258 292 - -
Aed2g0479 405 Pfam Helix-loop-helix DNA-binding domain 196 247 IPR011598 GO:0046983
Aed2g0479 405 PANTHER TRANSCRIPTION FACTOR BHLH70 21 404 - -
Aed2g0479 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 262 IPR036638 GO:0046983
Aed2g0479 405 Coils Coil 243 263 - -
Aed2g0479 405 SMART finulus 201 252 IPR011598 GO:0046983
Aed2g0479 405 MobiDBLite consensus disorder prediction 159 196 - -
Aed2g0479 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0479 Aed-Chr2 3345273 3348736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0479 44 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 40.274 1.72e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g0479 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0479 - - gmx:100789928 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0479 2 3345273 3348736 Aed2g0479 2 3345273 3348736 ECH