Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0453 ATGACTTTCATTCTCACCTTCTTCTTCACAGCCATTGCTTTTGTGGCTCAATCATTTCACAAGTACATGATCCTGAGTCTGCACAAACTATACAAGCATTATGGATATGCTGCTGCTGAAGTGAAGAACAATGAGGAGCATGAAAGTGATTATTATTGTTCAGTGTGTCTAAGCCAAATTTGTAAAGGGGAAAAGGCAAGGTCTCTTCCAGTGTGCAACCACAGATACCATGCTGATTGTATTGGTGCTTGGTTGAAGAATCACACCACATGCCCTCTTTGTAGGAACAAAATCACTGACCATATTCCCCAAAAACATAAACAGGTGAAGAACTTAGGAGAATCTTTGTTCAATCTCATTCAGAGTTTCTCTGATCTATTGGTAGCTATTCTCTACATGATGCTTCCATCTACCATCACTGAGAGTTTCCCTTTGGTTCATTGA 444 0.3986 MTFILTFFFTAIAFVAQSFHKYMILSLHKLYKHYGYAAAEVKNNEEHESDYYCSVCLSQICKGEKARSLPVCNHRYHADCIGAWLKNHTTCPLCRNKITDHIPQKHKQVKNLGESLFNLIQSFSDLLVAILYMMLPSTITESFPLVH 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0453 147 Pfam Ring finger domain 53 95 IPR001841 -
Aed2g0453 147 PANTHER RING-H2 FINGER PROTEIN ATL3 43 108 - -
Aed2g0453 147 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 43 108 IPR044675 -
Aed2g0453 147 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
Aed2g0453 147 SMART ring_2 53 94 IPR001841 -
Aed2g0453 147 SUPERFAMILY RING/U-box 43 101 - -
Aed2g0453 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0453 Aed-Chr2 3122496 3122939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0453 53 98 C3H Transcription Factor Family AT1G53820 58.696 4.46e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0453 - - gmx:100500375 261.536