Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0436 ATGTTTCCGTTTCATCCACAAGGAGCTCCGAAACACACTTGCACTCTTCTCGCTGTGACCTGTGGAGCAAGTTTCGCAGAGCACAAGTCCTCGCAGAATCAGCTCAAATATCCTTTCCCCGAGCTAGTTTCCGCGGGGCGTCTTGAGGTTCAAACTCTTCGCAATCCGGAGAAGGAACAGTTTCGGAAAGTTCTGGAATCGTATCAACCGAATTTTGTTTACTTACAAGGAGAACAGCTAGAGAATGACGAAGTTGGCTCACTGGTTTGGCAAGGTGTGGAATTATCCACTTCTGAGGATATAACAGAGCTCTTTGGTTCCACATTGCCGACGGCTGTATATTTAGAAATACCAAATGGAGAAAGCTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATGCCTTTTCTTGTTATGCTGCCTGCCATTTCCTTCAAGCATTTCTTTCAGTAGTACAGAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTCACTGTGTCCAAAACAATCAAGTGCTTCTTTCTGACAGCAATGATGCTAGTAGTGAGATGGGACCACACCTTTTTGGCGATTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGATGAAGAGGATGATGACGAAAGTTCTTCAGGCAGTTTGCCTGCCATAAAGATACATGAGGATGAAGTGAACTTGAGATTTCTCATCTGTGGCACACCTTCTACTGTTGACGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCTGCTGCTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAACGACCAGCTCTTGGAGAGTCATATAAAAAACGAGATAATTGAGAAGAGTCAGCTAGTTCATGCACAACTCAACAATGAGGGAAACAAACAGAACATCTCCGAACCTCGCAAATCTGCTTCTATTGCCTGTGGAGCATCTATATATGAAATTGGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGGCAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATCCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCCGAGCGCTTACTTTTCTTCTATCAAAACTATGAGAAAGATAGCTGTACACACAAAAGTAATGTAATTTTTAGCATCCCCCCTGGTTGGTTGAAACCTCCCCCTCCTACAAGAAAAAAGTGTGAACCAAGCCAAGGGGCTAGCCCTGCTCTTCATGGAGGTGTCTTTGCAGGGCAGGGTGGTGTTCATAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGGTGAATGGGATTAGCACACCATTAACTCCTGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCACACATTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACGGATGGTTTTGATGGCGCTCAGGTAGAGGTTAATTTGCCACTTGTGGCCCCTACGAAGCGTAGTAGTATTGGATCAACATCTGCAACACACAGAAAATCATTTTCAAGCGCAGCTCAGTCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTTAAGAAACATGGTTGCGGTAGAGGCCCAGTACAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACATAATAGACTAATTCCTCAAGGAGGGATTGCCGAGTTCCCTGATGCCATACTCAACGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAACAACCAATAGAATGACTGGTGTTGGAAATACTCTCAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGATGATGTAGATGGAGAGTGTTGCTTGCTGTGTCACAGCAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAATGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGTGCGTTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGCCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGCTAATGGGTATTCTCAAGGGTCAATGTCTTCACGACCCCTTTGA 2352 0.4375 MFPFHPQGAPKHTCTLLAVTCGASFAEHKSSQNQLKYPFPELVSAGRLEVQTLRNPEKEQFRKVLESYQPNFVYLQGEQLENDEVGSLVWQGVELSTSEDITELFGSTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNAFSCYAACHFLQAFLSVVQSSSTHTWDAFHLARASFELHCVQNNQVLLSDSNDASSEMGPHLFGDCLKINVDPPEIDEEDDDESSSGSLPAIKIHEDEVNLRFLICGTPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRKSASIACGASIYEIGMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNYEKDSCTHKSNVIFSIPPGWLKPPPPTRKKCEPSQGASPALHGGVFAGQGGVHKVNEEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGAQVEVNLPLVAPTKRSSIGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGIAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRPL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0436 783 CDD PHD_ARID4_like 706 758 - -
Aed2g0436 783 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Aed2g0436 783 SUPERFAMILY ARID-like 596 712 IPR036431 GO:0003677
Aed2g0436 783 SMART ARID_2 593 696 - -
Aed2g0436 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 759 IPR013083 -
Aed2g0436 783 MobiDBLite consensus disorder prediction 553 572 - -
Aed2g0436 783 Gene3D - 590 701 IPR036431 GO:0003677
Aed2g0436 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 IPR042293 -
Aed2g0436 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 - -
Aed2g0436 783 MobiDBLite consensus disorder prediction 453 472 - -
Aed2g0436 783 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Aed2g0436 783 SUPERFAMILY FYVE/PHD zinc finger 699 767 IPR011011 -
Aed2g0436 783 CDD ARID 598 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0436 Aed-Chr2 3011108 3017964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0436 4 772 ARID Transcription Factor Family AT3G43240 60.052 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed2g0436 ARID 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0436 - - gmx:100816540 1472.22