Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0433 ATGTGGCACTCATGCATTAACCTACTCCTCATAAAGATTGCAGCCTCAAAAGGATATACAGTGAATATAAGGAATGTATCTGATCGTTTCGTGTTTCGAACCATTGCCTTTATTAGCAGTAAAACTAATGGATCTTCATCGGCATGTATGACTTTGCCCTCTACTCCTGAAGATAATTTCTTAGTTGATGATTTCTACTTTTCAGCACTTTATGATGCTGAAGAAGTATTTCCGATCTCAGATGAGAAATATGCAGAAGAGCTACAACTACAAGAAGCTCTTTATAACTCAACCATGTCAAGTACTATAGTTCAAAACAAAGTTATCCTAATTGATGATGATGATGAGGATGACGACGACATCATTTTGAGAACCCTCAAGGGGAAACAAAAAGAGACCGGTGAGTCTTCTGGAGTCTACTGTGGCATTTGCATGGATGCCAAATCTCGTGAAGAAATATTCAGGAACCAAAACTGTTCCCACTCATTCTGTGAAGATTGCATAAGGAGTTATGTGGGCTCAAAGATTCAAGAGAATATATCTATGGTGGAATGCCCTGACCCGAAATGCAAAGGGGTTATAGAGCCTCAACACTGCCACTCAATTATCCCTAAGGAAGTGTTTGAAAGATGGGAAAATGCCCTTTGTGAGAATTTGGTGCTTGCATCACAGAAATTCTATTGCCCTTTTAAGGATTGTTCAGCTATGTTGATTCATGATGCAGAGGAAGTTGTGACAGTTTCGGAGTGTCCACATTGTAACAGACTGTTTTGTGCACAGTGTAAGGTTTCGTGGCATGCAGGAGTAGATTGTAAGGTTTTTCAGAATTTGAACGAGTACGAGCGAGAGGGGGGAGATTTAATGGTGATGGAACTTGCTAAGAATAAAAGTTGGAAAAGATGCCCAAAATGCAACTTTTATGTTGAAAGAATTGATGGATGCACACGTATTTCTTGCAGGTTTGTCATCTACATGTTTCAAACCAATCTTTTTGTGTGCTTATGA 1005 0.393 MWHSCINLLLIKIAASKGYTVNIRNVSDRFVFRTIAFISSKTNGSSSACMTLPSTPEDNFLVDDFYFSALYDAEEVFPISDEKYAEELQLQEALYNSTMSSTIVQNKVILIDDDDEDDDDIILRTLKGKQKETGESSGVYCGICMDAKSREEIFRNQNCSHSFCEDCIRSYVGSKIQENISMVECPDPKCKGVIEPQHCHSIIPKEVFERWENALCENLVLASQKFYCPFKDCSAMLIHDAEEVVTVSECPHCNRLFCAQCKVSWHAGVDCKVFQNLNEYEREGGDLMVMELAKNKSWKRCPKCNFYVERIDGCTRISCRFVIYMFQTNLFVCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0433 334 SMART ibrneu5 209 271 IPR002867 -
Aed2g0433 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Aed2g0433 334 ProSiteProfiles TRIAD supradomain profile. 137 334 IPR044066 -
Aed2g0433 334 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 101 324 - -
Aed2g0433 334 ProSiteProfiles Zinc finger RING-type profile. 141 189 IPR001841 -
Aed2g0433 334 SUPERFAMILY RING/U-box 216 276 - -
Aed2g0433 334 ProSitePatterns Zinc finger RING-type signature. 159 168 IPR017907 -
Aed2g0433 334 Pfam Zinc finger, C3HC4 type (RING finger) 141 186 IPR018957 GO:0046872
Aed2g0433 334 Gene3D - 269 321 - -
Aed2g0433 334 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 101 324 IPR031127 GO:0004842|GO:0016567
Aed2g0433 334 SUPERFAMILY RING/U-box 136 218 - -
Aed2g0433 334 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Aed2g0433 334 SUPERFAMILY RING/U-box 285 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0433 Aed-Chr2 2995711 2996964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0433 128 319 C3H Transcription Factor Family AT2G31770 26.341 1.21e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0433 K11975 - gmx:100816161 451.825